Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq3 107 2e-18
seq8 104 3e-17
>seq6
Length=78779235
Score = 107 bits (118), Expect = 2e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || ||||||||||||||||||||||| |||| || || || || ||||||||
Sbjct 3703500 TCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAG 3703441
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || | |||||||| | || | || ||||||||| ||| || |||| |
Sbjct 3703440 ATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTA 3703381
Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | || || |||| || || || | ||||||||||| || ||||| |||||
Sbjct 3703380 TCAATAGTATCGGAGCTC---TCGACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTG 3703324
Query 42195 ACAAAGATTTGCAT 42208
||||| ||||||||
Sbjct 3703323 ACAAAAATTTGCAT 3703310
Score = 104 bits (114), Expect = 3e-17
Identities = 156/218 (72%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|| |||||| || | || |||||| ||||| ||||||||||| |||||||| | ||
Sbjct 3703750 CAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCGGCCATC 3703691
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| || || ||||| || || ||||| | ||||||||| | || | || |||||||||
Sbjct 3703690 CTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3703631
Query 42116 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 42171
||| || |||| ||| | | | ||||| |||| || || || | |||||
Sbjct 3703630 TTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGA 3703575
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|||| ||||| || || || || || || || ||||||
Sbjct 3703574 TGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCATT 3703537
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||||||||||||||| ||||||| | | || || |||||||| || |||||
Sbjct 3703957 CTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCTGCGAA 3703898
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | | |||||| || | || | | |||||| ||| || || |||| |||
Sbjct 3703897 GATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTTATCCTGTATCTTCGCCTTGA-CGT 3703839
Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | |||||| |||| ||||| || | ||||| || || ||||| | ||||
Sbjct 3703838 TGTCGATCGTGTCAGAGCTC---TCCACCTCCAAGGTGATCGTCTTCCCCGTCAAGGTCT 3703782
Query 42193 TTACAAAGATTTGCAT 42208
| ||||| || |||||
Sbjct 3703781 TGACAAATATCTGCAT 3703766
>seq3
Length=113259003
Score = 107 bits (118), Expect = 2e-18
Identities = 145/201 (72%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070
|||| ||||||||| |||||||||||||| || || || |||| || ||||| || ||
Sbjct 21886203 TGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGTTTGCC 21886262
Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130
|| || || |||| |||||||| | || | | |||||||||| |||||| |||
Sbjct 21886263 GGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTGGCTTT 21886322
Query 42131 GAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187
|| | | | ||||| ||| || || |||| |||||||| ||||| || ||
Sbjct 21886323 GACATTATCAATGGTGTCAGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCTGTGAG 21886379
Query 42188 CGTCTTTACAAAGATTTGCAT 42208
|| || |||||||| |||||
Sbjct 21886380 GGTTTTCACAAAGATCTGCAT 21886400
>seq8
Length=131339754
Score = 104 bits (114), Expect = 3e-17
Identities = 143/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| || |||||||| || || || || |||| || |||||||| || || ||
Sbjct 3136030 CTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAA 3136089
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
||||| | ||||||||| | || | | ||| |||||| ||| |||| | |||||
Sbjct 3136090 AATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCC-TGAATTTTGGCTTTGACAT 3136148
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| |||| || || || | |||||||||||||| || || ||||
Sbjct 3136149 TGTCGATTGTGTCAGAGCTC---TCGACCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCT 3136205
Query 42193 TTACAAAGATTTGCAT 42208
| || ||||| |||||
Sbjct 3136206 TAACGAAGATCTGCAT 3136221
Score = 102 bits (112), Expect = 9e-17
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||| | ||| | ||| ||||||||| || ||||| || || ||||| || | || ||
Sbjct 3136240 CACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTC 3136299
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || || || || || | ||||||||| | || | || ||||||||||
Sbjct 3136300 AAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 3136359
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175
|||||| |||| | | | ||||| |||| || || || | |||||||||
Sbjct 3136360 GATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTC---TCAACCTCAAGCGTGATGGT 3136416
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||| || | ||||| ||||| || |||||
Sbjct 3136417 TTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449
Score = 100 bits (110), Expect = 3e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||||| ||| | || | ||| | || ||||||||| || || || |||||
Sbjct 3136451 CCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGTCAGCA 3136510
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || |||||||| ||||| || ||||| | ||||||||| | ||
Sbjct 3136511 AGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGG 3136570
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCC 42158
| || |||||||||| |||||| |||| | | | |||||| ||| ||
Sbjct 3136571 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCGGAGCTC---TCG 3136627
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | ||||||||||| || || | ||||| ||||| || |||||
Sbjct 3136628 ACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 122668994 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAA 122669053
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | | ||||||||| ||| || |||| |
Sbjct 122669054 AATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 122669113
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| || || || |||| |||||||| ||||| || || || || ||
Sbjct 122669114 GTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGAC 122669173
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||| ||
Sbjct 122669174 GAAGATCTGCATGTT 122669188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543132730433280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |