Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 seq6 86.0 4e-12 >seq8 Length=131339754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| || ||| |||| || | || Sbjct 3135791 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGC 3135850 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | | ||| || || || || || ||||| || || ||| Sbjct 3135851 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTG 3135910 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | || || || |||||||||||||| |||||| Sbjct 3135911 GCCTTGACATTGTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTTTTTCCTGTC 3135970 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||||||| Sbjct 3135971 AGGGTCTTAACGAAAATTTGCATA 3135994 >seq6 Length=78779235 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| || | || | |||||| || || || || || || |||||||| Sbjct 3703536 CCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCC 3703477 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | |||||| |||||| | || | | || ||||| ||| Sbjct 3703476 AGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGA 3703417 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || ||| || ||| | || ||||||||| | || || Sbjct 3703416 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCGACC 3703357 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || || || |||||||||||||| Sbjct 3703356 TCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357340637408720