Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq3 100 3e-16 seq8 95.1 1e-14 seq9 87.8 2e-12 >seq6 Length=78779235 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || ||||| | || ||||| || || |||||||| |||||||| ||||| Sbjct 3703539 ATTCCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCA 3703480 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||||||| ||| | || | | |||||||||||| Sbjct 3703479 GCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGA 3703420 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || ||||| || || |||| || | || ||||| |||| Sbjct 3703419 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCG 3703360 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| |||||||| || || |||||||||||||| Sbjct 3703359 ACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||||||||| || ||||| | ||| ||| || Sbjct 3703062 ACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGGCCATCCTCA 3703003 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || ||| | || | ||||||||||| || || || ||||| || || || Sbjct 3703002 AGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 3702943 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | || | |||||| || || || || ||||| || | || ||| Sbjct 3702942 ATCTTTGCTTTAACATTGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTG 3702883 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| ||||| || |||||| Sbjct 3702882 CCGGTTAGTGTTTTCACAAAGATCTGCATC 3702853 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||||||| || |||||||| ||||| ||||| || || ||||| ||| Sbjct 3703311 ATGCCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCG 3703252 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || ||||| || | ||||| | |||||||||||| Sbjct 3703251 GCCAAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGA 3703192 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || ||||| || || |||| || | || ||||| |||| Sbjct 3703191 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCG 3703132 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || || || || ||||| || ||||| Sbjct 3703131 ACCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 >seq3 Length=113259003 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || |||||||||||||| ||||| || ||| || || Sbjct 21886192 ACGAGGTGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCA 21886251 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| || ||||||||| || || || || || || || || Sbjct 21886252 AGCTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGG 21886311 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| ||| |||||| |||||||| | || ||| Sbjct 21886312 ATTTTGGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTG 21886371 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| || |||||| Sbjct 21886372 CCTGTGAGGGTTTTCACAAAGATCTGCATC 21886401 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||||| ||| || || || || || ||||| ||||| ||||| || Sbjct 21885487 ATGCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCA 21885546 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || || | ||||| | |||||||| || Sbjct 21885547 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGG 21885606 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || ||| ||| | || | ||||||||| ||| Sbjct 21885607 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCC 21885666 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || ||||||||||| || || |||||||| ||||| Sbjct 21885667 ACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 >seq8 Length=131339754 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 122668959 CCTCCGCGGAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 122669018 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || ||||| ||| | || | || ||||||||||| || Sbjct 122669019 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGGCGCTGCTGGTCCGGGGGG 122669078 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || ||||| || || |||| || | ||||| || |||||||| Sbjct 122669079 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACC 122669138 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || |||||||| || ||||| || || || ||||| Sbjct 122669139 TCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 122669185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | ||| ||||| || || || ||||||||||| || || ||| Sbjct 3136220 ATGCCTCCACGGAGCCTTAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 3136279 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | || || || || | || | | |||||||| || Sbjct 3136280 GCGAGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGG 3136339 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || ||||| |||| || | ||||| || ||| Sbjct 3136340 GGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTCTCA 3136399 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||||||||| | || || |||||||| ||||| Sbjct 3136400 ACCTCAAGCGTGATGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 >seq9 Length=68543460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 45155 TTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAA 45214 |||||| | |||||| ||||||||| ||||||| ||| || || | |||||| Sbjct 1094496 TTGGATGTCGTAATCGGCTACGGTTTTATCTTCGTCCAGTTGATTCCCGCCAAATATCAG 1094555 Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274 || |||||||| |||| ||||||| || ||||| || | | ||| | || | Sbjct 1094556 ACGCTGCTGGTCGACGGGAACCCCTTCTTGCTCCTGAATCTTGAGCTCGATATCGTCGAT 1094615 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| ||| |||||||| || | ||| || ||| ||||||||||||||| || Sbjct 1094616 TCTGTCGCTGCTCTCCACTTCGAGGGTGATCGTCTTCTCGGATAGAGTTTTTACAAAGAT 1094675 Query 45335 TTGCAT 45340 ||||| Sbjct 1094676 CTGCAT 1094681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451936574728320