Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq3 107 2e-18 seq6 105 8e-18 >seq8 Length=131339754 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || || |||| ||||||||||| || ||||| Sbjct 122668994 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAA 122669053 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 122669054 AATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 122669113 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 122669114 GTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGAC 122669173 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 122669174 GAAGATCTGCATGTTG 122669189 Score = 111 bits (122), Expect = 2e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||||||||| |||||||||| ||||| || | || || Sbjct 3136240 CACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTC 3136299 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| ||||| || || | | ||||||||| | || | || |||||||||| Sbjct 3136300 AAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 3136359 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||| || ||||| | | | ||||| |||| || || || | ||||||||| Sbjct 3136360 GATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTC---TCAACCTCAAGCGTGATGGT 3136416 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| |||| || || ||||| || ||||| Sbjct 3136417 TTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||||||||| |||||||| | ||||||||| | || || Sbjct 3135556 CACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCTAGAGTGCGGCCATCCTC 3135615 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || ||||| || | | ||||||||| | || | | ||||||||| Sbjct 3135616 GAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTG 3135675 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||| | | | | || || |||| ||||| || | |||||||| Sbjct 3135676 GATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTC---TCCACCTCAAGAGTGATGGT 3135732 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || || ||||| Sbjct 3135733 CTTCCCCGTAAGAGTCTTCACGAAAATCTGCAT 3135765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||||| ||| | || ||||| | || |||||||||||| || ||||| | Sbjct 3136449 TGCCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGTCAG 3136508 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || |||||||| || || || || | | ||||||||| | | Sbjct 3136509 CAAGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCGGGG 3136568 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || |||||||||| ||| || ||||| | | | ||||| |||| | Sbjct 3136569 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCGGAGCTC---T 3136625 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | ||||||||||| || |||| || || ||||| || ||||| Sbjct 3136626 CGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || | || || || |||| || |||||||| || ||||| Sbjct 3135802 CTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAA 3135861 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | || |||||| ||| ||||| ||||| | Sbjct 3135862 GATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTGGCCTTGACATT 3135921 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| ||||| |||| || |||||||| || ||||| || || Sbjct 3135922 GTCGATTGTATCCGAGCTC---TCCACCTCCAAGGTAATGGTTTTTCCTGTCAGGGTCTT 3135978 Query 46579 AACAAAGATTTGCAT 46593 ||| || |||||||| Sbjct 3135979 AACGAAAATTTGCAT 3135993 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || | ||| ||||| |||| || |||||||| || || || Sbjct 3136030 CTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAA 3136089 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||| |||||| || || |||| | Sbjct 3136090 AATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTTGGCTTTGACATT 3136149 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||||||||| ||||| || || Sbjct 3136150 GTCGATTGTGTCAGAGCTC---TCGACCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCTT 3136206 Query 46579 AACAAAGATTTGCAT 46593 ||| ||||| ||||| Sbjct 3136207 AACGAAGATCTGCAT 3136221 >seq3 Length=113259003 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | ||| |||||| ||||| |||||||| | || || || | Sbjct 21885045 ACGAAGCACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGTCC 21885104 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || |||| | ||| ||||| | || | | |||||| Sbjct 21885105 ATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGGTCCGGAGGGATCCCCTCCTT 21885164 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||||| ||| | | | | |||||| |||| ||||| |||| || Sbjct 21885165 GTCCTGGATCTTCGCCTTCACATTGTCAATCGTGTCGGAGCTC---TCCACCTCCAGGGT 21885221 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||||| || || || || ||||| || ||||| Sbjct 21885222 GATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 21885260 Score = 107 bits (118), Expect = 2e-18 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | | || ||| || || | || |||||| ||||| || ||||| | Sbjct 21885488 TGCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAG 21885547 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || ||||| | ||||||||| | | Sbjct 21885548 CGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 21885607 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | |||||||||| |||||| | ||| | | | | | ||||| |||| Sbjct 21885608 GGATTCCCTCCTTGTCCTGGATCTT-TGCTTTCACATTGTCGATGGTGTCGGAGCTC--- 21885663 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| ||||| || || || || ||||| || ||||| Sbjct 21885664 TCCACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||||||||| || | || || || |||| || ||||| |||||||| || Sbjct 21886209 CTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGTTTGCCGGCAAA 21886268 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||||| | || | | |||||||||| ||| || |||| | Sbjct 21886269 GATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTGGCTTTGACATT 21886328 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 21886329 ATCAATGGTGTCAGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTTTT 21886385 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 21886386 CACAAAGATCTGCAT 21886400 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || || || || | | || ||| | || || ||||||||||| || || Sbjct 21885297 CTCCTTCTGAATGTTATAATCCGCCAACGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAA 21885356 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | |||||||||| |||||| | ||| | | Sbjct 21885357 GATAAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTT-TGCTTTCACAT 21885415 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| |||||||| ||||| || || || | Sbjct 21885416 TGTCGATGGTGTCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCT 21885472 Query 46578 TAACAAAGATTTGCAT 46593 ||||||| || ||||| Sbjct 21885473 TAACAAAAATCTGCAT 21885488 >seq6 Length=78779235 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | || ||||| | ||| |||||||||||| ||||| || | Sbjct 3703082 TGCCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCCG 3703023 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || ||||| ||||| ||||| || | || |||||||||| | Sbjct 3703022 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGAG 3702963 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| |||||| | ||| | | | | | | ||||| ||||| Sbjct 3702962 GGATCCCTTCCTTGTCCTGGATCTT-TGCTTTAACATTGTCGATGGTGTCAGAGGATTCA 3702904 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 3702903 ACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCACAAAGATCTGCAT 3702854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| || | ||||| || |||| ||||| || || || ||||| Sbjct 3703500 TCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAG 3703441 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||||| | || | || ||||||||| |||||| ||||| | Sbjct 3703440 ATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTA 3703381 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || || |||| || || |||| ||||||||||| || || || || || Sbjct 3703380 TCAATAGTATCGGAGCTC---TCGACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTG 3703324 Query 46580 ACAAAGATTTGCAT 46593 ||||| |||||||| Sbjct 3703323 ACAAAAATTTGCAT 3703310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565155083859840