Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq5 96.9 4e-15
seq2 96.9 4e-15
seq8 82.4 9e-11
>seq5
Length=131469567
Score = 96.9 bits (106), Expect = 4e-15
Identities = 84/102 (82%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 15718 CAATTGAGACAACTCACAAAAGTTGTCATGGGTTCATCAGCTGACCTCGTCTGTAACTGA 15777
|| || | |||| |||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 14402752 CAGTTTACACAAGTCACAAAAGTTGTCATCGGTTCATCAGCTGACCGAGTCTGCAACTGA 14402693
Query 15778 TAATAAGT-TGTTTTCATAGACTTACAACGTCCACATTTGAA 15818
|||||||| ||||| | | |||||| |||||||||||
Sbjct 14402692 TAATAAGTGCATTTTCGCTG-CCCACAACGACCACATTTGAA 14402652
>seq2
Length=84732013
Score = 96.9 bits (106), Expect = 4e-15
Identities = 173/247 (70%), Gaps = 12/247 (5%)
Strand=Plus/Minus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562
||| || ||||| || ||||| |||||||| || |||| || || || ||||| |
Sbjct 24868660 ATGGAGGCCTTCGTCTCGAGATATGAGCTCGTT--TGAA--AAGGTTAACCCCGGCATCA 24868605
Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622
||| | || || ||||| || ||||||||||| || || || ||||| || || || |
Sbjct 24868604 ATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGA 24868545
Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTC-GAGACTTGTCGAACCACTTGAG 119680
| || || ||||||| | | ||| || |||| || ||| | |||| |||||| ||
Sbjct 24868544 CGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGACTCTGAGCC--ATCGATCCACTTCAG 24868487
Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740
||||| | |||||| | | ||| |||| || | |||||| | ||||| | |
Sbjct 24868486 CGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCT 24868427
Query 119741 CTTTTCA 119747
|||||||
Sbjct 24868426 CTTTTCA 24868420
Score = 96.9 bits (106), Expect = 4e-15
Identities = 173/247 (70%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562
||| || ||||| || ||||| |||||||| || |||| || || || ||||| |
Sbjct 26602966 ATGGAGGCCTTCGTCTCGAGATATGAGCTCGTT--TGAA--AAGGTTAACCCCGGCATCA 26603021
Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622
||| | || || ||||| || ||||||||||| || || || ||||| || || || |
Sbjct 26603022 ATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGA 26603081
Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTC-GAGACTTGTCGAACCACTTGAG 119680
| || || ||||||| | | ||| || |||| || ||| | |||| |||||| ||
Sbjct 26603082 CGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGACTCTGAGCC--ATCGATCCACTTCAG 26603139
Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740
||||| | |||||| | | ||| |||| || | |||||| | ||||| | |
Sbjct 26603140 CGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCT 26603199
Query 119741 CTTTTCA 119747
|||||||
Sbjct 26603200 CTTTTCA 26603206
>seq8
Length=131339754
Score = 82.4 bits (90), Expect = 9e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 15718 CAATTGAGACAACTCACAAAAGTTGTCATGGGTTCATCAGCTGACCTCGTCTGTAACTGA 15777
|| || | |||| |||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 122800443 CAGTTTACACAAGTCACAAAAGTTGTCATCGGTTCATCAGCTGACCGAGTCTGCAACTGA 122800384
Query 15778 TAATAAGT 15785
| ||||||
Sbjct 122800383 TTATAAGT 122800376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588889184937600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |