Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 4e-15 seq2 96.9 4e-15 seq8 82.4 9e-11 >seq5 Length=131469567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 15718 CAATTGAGACAACTCACAAAAGTTGTCATGGGTTCATCAGCTGACCTCGTCTGTAACTGA 15777 || || | |||| |||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct 14402752 CAGTTTACACAAGTCACAAAAGTTGTCATCGGTTCATCAGCTGACCGAGTCTGCAACTGA 14402693 Query 15778 TAATAAGT-TGTTTTCATAGACTTACAACGTCCACATTTGAA 15818 |||||||| ||||| | | |||||| ||||||||||| Sbjct 14402692 TAATAAGTGCATTTTCGCTG-CCCACAACGACCACATTTGAA 14402652 >seq2 Length=84732013 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/247 (70%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562 ||| || ||||| || ||||| |||||||| || |||| || || || ||||| | Sbjct 24868660 ATGGAGGCCTTCGTCTCGAGATATGAGCTCGTT--TGAA--AAGGTTAACCCCGGCATCA 24868605 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 ||| | || || ||||| || ||||||||||| || || || ||||| || || || | Sbjct 24868604 ATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGA 24868545 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTC-GAGACTTGTCGAACCACTTGAG 119680 | || || ||||||| | | ||| || |||| || ||| | |||| |||||| || Sbjct 24868544 CGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGACTCTGAGCC--ATCGATCCACTTCAG 24868487 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740 ||||| | |||||| | | ||| |||| || | |||||| | ||||| | | Sbjct 24868486 CGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCT 24868427 Query 119741 CTTTTCA 119747 ||||||| Sbjct 24868426 CTTTTCA 24868420 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/247 (70%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562 ||| || ||||| || ||||| |||||||| || |||| || || || ||||| | Sbjct 26602966 ATGGAGGCCTTCGTCTCGAGATATGAGCTCGTT--TGAA--AAGGTTAACCCCGGCATCA 26603021 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 ||| | || || ||||| || ||||||||||| || || || ||||| || || || | Sbjct 26603022 ATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGA 26603081 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTC-GAGACTTGTCGAACCACTTGAG 119680 | || || ||||||| | | ||| || |||| || ||| | |||| |||||| || Sbjct 26603082 CGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGACTCTGAGCC--ATCGATCCACTTCAG 26603139 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740 ||||| | |||||| | | ||| |||| || | |||||| | ||||| | | Sbjct 26603140 CGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCT 26603199 Query 119741 CTTTTCA 119747 ||||||| Sbjct 26603200 CTTTTCA 26603206 >seq8 Length=131339754 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 15718 CAATTGAGACAACTCACAAAAGTTGTCATGGGTTCATCAGCTGACCTCGTCTGTAACTGA 15777 || || | |||| |||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct 122800443 CAGTTTACACAAGTCACAAAAGTTGTCATCGGTTCATCAGCTGACCGAGTCTGCAACTGA 122800384 Query 15778 TAATAAGT 15785 | |||||| Sbjct 122800383 TTATAAGT 122800376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588889184937600