Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq8 129 7e-25
seq7 104 3e-17
seq2 82.4 9e-11
>seq8
Length=131339754
Score = 129 bits (142), Expect = 7e-25
Identities = 233/336 (69%), Gaps = 6/336 (2%)
Strand=Plus/Plus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281
||| ||||||||| | ||||| || || |||| |||| || || || ||| || |
Sbjct 3127968 ATCTAGGATATCAGCACGATTGGTAGCTGCGACCACAATAACCCCGGTATTTCCTT--CG 3128025
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|||||||||||||| || ||||| || || | ||| ||||| | ||| |||||| ||
Sbjct 3128026 AAACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCG 3128085
Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
| |||| | | ||| | || || |||||||||||||||| || ||||| ||
Sbjct 3128086 CCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAACAAATACAATGCAA 3128145
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
||| ||| || || | | || ||||| ||||| ||| || || || ||||||
Sbjct 3128146 GGTGCATTCTCTTTTGCCTTCTTGAAAAGATCACGAACTCTTGAAGCACCAACTCCAACA 3128205
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||||||||| | | | ||| |||| || || || || || |||||| ||
Sbjct 3128206 AACATCTCCACAAACTCCGATCCTGAA-ATTGAGAAAAATGGAACGCCAGCTTCACCAGC 3128264
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || || || | |||||| || || |||||
Sbjct 3128265 TATTGCCTTTGCAAGCAAAGTCTTTCCAGTTCCTGG 3128300
>seq7
Length=151357931
Score = 104 bits (114), Expect = 3e-17
Identities = 193/281 (69%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| ||||||||||| ||||| || ||||| ||||| || |||| ||||||||| || |
Sbjct 78779729 AATCCATCCATCTCCGTCAACAGCTGGTTTATAGTCTGCTCCCTCTCATCATTCCCT--C 78779786
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
| | | || || | | ||| | || || |||||||||||||| ||||| |||||||
Sbjct 78779787 CTCCAAGCCCCGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCGATGAACACAATAC 78779846
Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455
| || || |||| || | || || | ||| | |||||| ||| ||||||
Sbjct 78779847 AGGGTGCCTTAGATTTC----GCCTTCTCGAATAAATCCCTAACCCTAGAGGCTCCCACA 78779902
Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515
|||||||||| || || || | | || | |||| | ||| || || | ||
Sbjct 78779903 CCAACAAACAATTCGACGAATTCGGATGCTGCACATGAAAAGAACGGCACTCCGGCCTCT 78779962
Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || | || ||||| | ||| ||||| ||||| || ||
Sbjct 78779963 CCGGCCACAGCCCGGGCTAAAAGGGTCTTCCCCGTCCCAGG 78780003
>seq2
Length=84732013
Score = 82.4 bits (90), Expect = 9e-11
Identities = 166/246 (67%), Gaps = 9/246 (4%)
Strand=Plus/Minus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
||||| || || ||||| || || || || ||||| ||| || || ||||| | ||
Sbjct 24868659 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 24868600
Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405
||||| || | ||| |||| || || || |||||||||||| || || || || ||
Sbjct 24868599 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 24868540
Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG---TCAAACCATTTCATT 117462
||||| || | | | ||||||||| ||||| || | || | ||| ||||
Sbjct 24868539 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 24868486
Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522
||||| | |||||||| | | || || | || | |||||| | ||| | | ||
Sbjct 24868485 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 24868426
Query 117523 TTTTCA 117528
||||||
Sbjct 24868425 TTTTCA 24868420
Score = 82.4 bits (90), Expect = 9e-11
Identities = 166/246 (67%), Gaps = 9/246 (4%)
Strand=Plus/Plus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
||||| || || ||||| || || || || ||||| ||| || || ||||| | ||
Sbjct 26602967 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 26603026
Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405
||||| || | ||| |||| || || || |||||||||||| || || || || ||
Sbjct 26603027 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 26603086
Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG---TCAAACCATTTCATT 117462
||||| || | | | ||||||||| ||||| || | || | ||| ||||
Sbjct 26603087 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 26603140
Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522
||||| | |||||||| | | || || | || | |||||| | ||| | | ||
Sbjct 26603141 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 26603200
Query 117523 TTTTCA 117528
||||||
Sbjct 26603201 TTTTCA 26603206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589893836830080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |