Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8 129 7e-25 seq7 104 3e-17 seq2 82.4 9e-11 >seq8 Length=131339754 Score = 129 bits (142), Expect = 7e-25 Identities = 233/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281 ||| ||||||||| | ||||| || || |||| |||| || || || ||| || | Sbjct 3127968 ATCTAGGATATCAGCACGATTGGTAGCTGCGACCACAATAACCCCGGTATTTCCTT--CG 3128025 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| || ||||| || || | ||| ||||| | ||| |||||| || Sbjct 3128026 AAACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCG 3128085 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | |||| | | ||| | || || |||||||||||||||| || ||||| || Sbjct 3128086 CCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAACAAATACAATGCAA 3128145 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 ||| ||| || || | | || ||||| ||||| ||| || || || |||||| Sbjct 3128146 GGTGCATTCTCTTTTGCCTTCTTGAAAAGATCACGAACTCTTGAAGCACCAACTCCAACA 3128205 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||||||||| | | | ||| |||| || || || || || |||||| || Sbjct 3128206 AACATCTCCACAAACTCCGATCCTGAA-ATTGAGAAAAATGGAACGCCAGCTTCACCAGC 3128264 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || || || | |||||| || || ||||| Sbjct 3128265 TATTGCCTTTGCAAGCAAAGTCTTTCCAGTTCCTGG 3128300 >seq7 Length=151357931 Score = 104 bits (114), Expect = 3e-17 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || ||||| ||||| || |||| ||||||||| || | Sbjct 78779729 AATCCATCCATCTCCGTCAACAGCTGGTTTATAGTCTGCTCCCTCTCATCATTCCCT--C 78779786 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || || | | ||| | || || |||||||||||||| ||||| ||||||| Sbjct 78779787 CTCCAAGCCCCGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCGATGAACACAATAC 78779846 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || || |||| || | || || | ||| | |||||| ||| |||||| Sbjct 78779847 AGGGTGCCTTAGATTTC----GCCTTCTCGAATAAATCCCTAACCCTAGAGGCTCCCACA 78779902 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 |||||||||| || || || | | || | |||| | ||| || || | || Sbjct 78779903 CCAACAAACAATTCGACGAATTCGGATGCTGCACATGAAAAGAACGGCACTCCGGCCTCT 78779962 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | || ||||| | ||| ||||| ||||| || || Sbjct 78779963 CCGGCCACAGCCCGGGCTAAAAGGGTCTTCCCCGTCCCAGG 78780003 >seq2 Length=84732013 Score = 82.4 bits (90), Expect = 9e-11 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||| || || ||||| || || || || ||||| ||| || || ||||| | || Sbjct 24868659 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 24868600 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| || | ||| |||| || || || |||||||||||| || || || || || Sbjct 24868599 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 24868540 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG---TCAAACCATTTCATT 117462 ||||| || | | | ||||||||| ||||| || | || | ||| |||| Sbjct 24868539 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 24868486 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | |||||||| | | || || | || | |||||| | ||| | | || Sbjct 24868485 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 24868426 Query 117523 TTTTCA 117528 |||||| Sbjct 24868425 TTTTCA 24868420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||| || || ||||| || || || || ||||| ||| || || ||||| | || Sbjct 26602967 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 26603026 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| || | ||| |||| || || || |||||||||||| || || || || || Sbjct 26603027 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 26603086 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG---TCAAACCATTTCATT 117462 ||||| || | | | ||||||||| ||||| || | || | ||| |||| Sbjct 26603087 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 26603140 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | |||||||| | | || || | || | |||||| | ||| | | || Sbjct 26603141 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 26603200 Query 117523 TTTTCA 117528 |||||| Sbjct 26603201 TTTTCA 26603206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589893836830080