Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 113 3e-20 seq8 98.7 6e-16 seq6 96.9 2e-15 >seq3 Length=113259003 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| |||| || ||||| ||||| ||||||| ||| | ||| |||| ||| Sbjct 21885052 ACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGTCCATCCTCC 21885111 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | || ||||| | || | |||||||||||| Sbjct 21885112 AGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGGTCCGGAGGGATCCCCTCCTTGTCCTGG 21885171 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || || | |||| || | ||| || || | ||| ||||| || Sbjct 21885172 ATCTTCGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTG 21885231 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||||||||| ||||||||| Sbjct 21885232 CCGGTGAGGGTCTTCACAAAAATCTGCATA 21885261 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | ||||| || | || || ||||| ||||||||||| | Sbjct 21885946 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCG 21886005 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || ||||| ||||| ||||| || || | ||||||||| | || Sbjct 21886006 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 21886065 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| ||| || | || | || | |||||| Sbjct 21886066 ATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCGGAGCTCTCAACC 21886125 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || || || ||||| ||||| || || |||||||| Sbjct 21886126 TCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 21886172 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||||| || | ||||| ||| || ||||| ||||||||||| | Sbjct 21885490 CCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCG 21885549 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || |||||||| || | | ||||||||| | || Sbjct 21885550 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 21885609 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| ||||| ||| || || | ||||| || | ||| Sbjct 21885610 ATTCCCTCCTTGTCCTGGATCTTTGCTTTCAC--AT--TGTCGATGGTGTCGGAGCTCTC 21885665 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| || || || || ||||| ||||| |||||||| Sbjct 21885666 CACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | ||||| || | || || ||||| ||||| ||||| | | Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||| ||| || || ||||| || || | ||||||||| | || Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| |||||| ||| || || | ||||| || | ||| Sbjct 21885838 ATGCCCTCCTTGTCCTGAATCTTGGCTTTTAC--AT--TGTCGATGGTGTCTGAGCTCTC 21885893 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 21885894 CACTTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||| | |||| || || || || || || || | ||| | || | || || ||||| Sbjct 21886197 GTGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTG 21886256 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| |||||||| || |||| ||||||||| | || | |||||||||||| || || Sbjct 21886257 TTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTT 21886316 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||||| || |||| || ||| ||| || |||| || ||||| || | Sbjct 21886317 GGCTTTGAC--AT--TATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGC 21886372 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGAC 34991 | ||||| || ||||||||||||||||| | |||||| Sbjct 21886373 CTGTGAGGGTTTTCACAAAGATCTGCATCT--GTAGAC 21886408 >seq8 Length=131339754 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| |||| | || || ||||| ||||| || || Sbjct 122668995 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAAA 122669054 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||||||| ||||| ||||| Sbjct 122669055 ATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 122669114 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| ||| ||||| || || ||||| || || || Sbjct 122669115 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACG 122669174 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 122669175 AAGATCTGCATGTT 122669188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| || || || ||||| || || Sbjct 3136715 TCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCGAAA 3136774 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| ||||| |||||| Sbjct 3136775 ATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTG 3136834 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| || || ||||| || || ||||||||| Sbjct 3136835 TCAATAGTGTCTGAGCTCTCCACCTCAAGGGTGATAGTCTTTCCTGTAAGTGTCTTCACA 3136894 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3136895 AAGATCTGCAT 3136905 >seq6 Length=78779235 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812 ||||| | || ||||||||| | || | || || ||||||||||||||||| | Sbjct 3703308 CCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCGGCC 3703249 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || ||||| ||||| ||||| || | | ||||||||| | | Sbjct 3703248 AAAG--TACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGAG 3703191 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| ||||| | || | || | ||| | Sbjct 3703190 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCGA 3703131 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 3703130 CCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || |||| |||| | || |||| || |||||||| || || || Sbjct 3703044 TCCTTTTGGATGTTGTAATCCGCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAG 3702985 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||| |||||||| ||||| ||| || || Sbjct 3702984 ATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCTTTAAC--AT 3702927 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || ||||| |||| || || || || || || || || || Sbjct 3702926 --TGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTTTT 3702869 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 3702868 CACAAAGATCTGCAT 3702854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324586945282176