Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq10 100 3e-16 seq3174 87.8 2e-12 seq831 87.8 2e-12 >seq4 Length=146560859 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||| | ||| | || ||||||||||||||||||||| Sbjct 9259124 CCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACCA 9259065 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | || || ||||| ||||||||| || | || | ||||| || ||| Sbjct 9259064 TTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGAA 9259005 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | ||||||| || || || ||||| || Sbjct 9259004 ACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATATG 9258945 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || |||||||||||| ||||| Sbjct 9258944 CCCTCGATACTATCATCTTTCATA 9258921 Score = 102 bits (112), Expect = 9e-17 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 || ||| || ||| || | ||||||||| || ||||| ||||| ||||||| || | Sbjct 9258809 TGAGGACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 9258750 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGA 48706 || | | | ||||||| | | ||||||| ||||| | ||| || || || | || Sbjct 9258749 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 9258691 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 || | ||| | ||| | |||||||||||| |||| || | | | ||| || ||||| Sbjct 9258690 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATA 9258631 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 ||| | || | ||||| |||||||| |||| || |||||| |||||| ||| || Sbjct 9258630 GGATCTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 >seq10 Length=73452336 Score = 100 bits (110), Expect = 3e-16 Identities = 128/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 |||||| || ||||||||||||||||||||||| || | || || ||||| |||||| Sbjct 24507399 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATATA 24507458 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 ||| || | || | ||||| || |||| ||| || || || || ||| ||| Sbjct 24507459 ACTGCCCATTGCACGAATATTGTGAACAGAAACACCAATTCCTCCAGCAGATTTGCTTAT 24507518 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 | ||||||| || || || ||||| || || || |||||||||||| ||||| Sbjct 24507519 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 24507573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 |||||| || ||||||||||||||||||||||| || | | || ||||| |||||| Sbjct 1168354 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1168295 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 ||| || | || | |||| || |||| ||| || || | || ||| ||| Sbjct 1168294 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1168235 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 | ||||||| || || || ||||| || || || |||||||||||| ||||| Sbjct 1168234 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 1168180 >seq3174 Length=2385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 |||||| || ||||||||||||||||||||||| || | | || ||||| |||||| Sbjct 1031 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1090 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 ||| || | || | |||| || |||| ||| || || | || ||| ||| Sbjct 1091 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1150 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 | ||||||| || || || ||||| || || || |||||||||||| ||||| Sbjct 1151 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 1205 >seq831 Length=51122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 |||||| || ||||||||||||||||||||||| || | | || ||||| |||||| Sbjct 18730 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 18789 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 ||| || | || | |||| || |||| ||| || || | || ||| ||| Sbjct 18790 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 18849 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 | ||||||| || || || ||||| || || || |||||||||||| ||||| Sbjct 18850 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 18904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562025945162880