Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 111 2e-19
seq10 100 3e-16
seq3174 87.8 2e-12
seq831 87.8 2e-12
>seq4
Length=146560859
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|| |||||||| | ||| | ||||| | ||| | || |||||||||||||||||||||
Sbjct 9259124 CCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACCA 9259065
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | || || ||||| ||||||||| || | || | ||||| || |||
Sbjct 9259064 TTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGAA 9259005
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| ||| | ||||||| || || || ||||| ||
Sbjct 9259004 ACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATATG 9258945
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || |||||||||||| |||||
Sbjct 9258944 CCCTCGATACTATCATCTTTCATA 9258921
Score = 102 bits (112), Expect = 9e-17
Identities = 168/240 (70%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647
|| ||| || ||| || | ||||||||| || ||||| ||||| ||||||| || |
Sbjct 9258809 TGAGGACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 9258750
Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGA 48706
|| | | | ||||||| | | ||||||| ||||| | ||| || || || | ||
Sbjct 9258749 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 9258691
Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766
|| | ||| | ||| | |||||||||||| |||| || | | | ||| || |||||
Sbjct 9258690 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATA 9258631
Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
||| | || | ||||| |||||||| |||| || |||||| |||||| ||| ||
Sbjct 9258630 GGATCTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
>seq10
Length=73452336
Score = 100 bits (110), Expect = 3e-16
Identities = 128/175 (73%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|||||| || ||||||||||||||||||||||| || | || || ||||| ||||||
Sbjct 24507399 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATATA 24507458
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
||| || | || | ||||| || |||| ||| || || || || ||| |||
Sbjct 24507459 ACTGCCCATTGCACGAATATTGTGAACAGAAACACCAATTCCTCCAGCAGATTTGCTTAT 24507518
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563
| ||||||| || || || ||||| || || || |||||||||||| |||||
Sbjct 24507519 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 24507573
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/175 (71%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|||||| || ||||||||||||||||||||||| || | | || ||||| ||||||
Sbjct 1168354 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1168295
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
||| || | || | |||| || |||| ||| || || | || ||| |||
Sbjct 1168294 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1168235
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563
| ||||||| || || || ||||| || || || |||||||||||| |||||
Sbjct 1168234 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 1168180
>seq3174
Length=2385
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/175 (71%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|||||| || ||||||||||||||||||||||| || | | || ||||| ||||||
Sbjct 1031 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1090
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
||| || | || | |||| || |||| ||| || || | || ||| |||
Sbjct 1091 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1150
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563
| ||||||| || || || ||||| || || || |||||||||||| |||||
Sbjct 1151 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 1205
>seq831
Length=51122
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/175 (71%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 48390 TTATAA-ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|||||| || ||||||||||||||||||||||| || | | || ||||| ||||||
Sbjct 18730 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 18789
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
||| || | || | |||| || |||| ||| || || | || ||| |||
Sbjct 18790 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 18849
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563
| ||||||| || || || ||||| || || || |||||||||||| |||||
Sbjct 18850 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATA 18904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562025945162880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |