Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 3e-11 >seq2 Length=84732013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| || || || ||||| ||||| | ||||| |||| | ||| | || || |||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCA 37286 ||||||| || ||||| || || | ||||||| ||| || || || |||||| | || Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGC-ACAAAAGCTCCCG 24868564 Query 37287 GAAAAGAAAATACCTTCAAC 37306 || |||||||| ||||| || Sbjct 24868563 GAGAAGAAAATCCCTTCGAC 24868544 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| || || || ||||| ||||| | ||||| |||| | ||| | || || |||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCA 37286 ||||||| || ||||| || || | ||||||| ||| || || || |||||| | || Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGC-ACAAAAGCTCCCG 26603062 Query 37287 GAAAAGAAAATACCTTCAAC 37306 || |||||||| ||||| || Sbjct 26603063 GAGAAGAAAATCCCTTCGAC 26603082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592229492503680