Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq8 122 7e-23
seq3 122 7e-23
seq6 118 8e-22
seq5 102 6e-17
seq9 87.8 1e-12
>seq8
Length=131339754
Score = 122 bits (134), Expect = 7e-23
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || ||||| || ||||| ||||||| ||| | |||| || | ||
Sbjct 3136246 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTCAAGCTG 3136305
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| || | | ||| || || || |||||||| || || || || |||||
Sbjct 3136306 CTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTT 3136365
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | |||||||| | || || ||||| |||| |||||||||||
Sbjct 3136366 GGCCTTGACATTGTCGATTGTGTCAGAGCTCTCAACCTCAAGCGTGATGGTTTTGCCGGT 3136425
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
|| || || ||||| |||||||||
Sbjct 3136426 CAAGGTCTTGACAAAAATCTGCATG 3136450
>seq3
Length=113259003
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| ||||| || || || || || ||||| || || | || | | |||| |||
Sbjct 21885736 ACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCC 21885795
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || ||||| |||| | ||| || || || || ||||| || || || |||
Sbjct 21885796 AACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGA 21885855
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||||||| | || | ||||| || | ||||||||||| |||| || |||
Sbjct 21885856 ATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACTTCAAGGGTGATAGTCTTG 21885915
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | || || ||||| |||||||||
Sbjct 21885916 CCAGTGAGGGTCTTGACAAAAATCTGCATG 21885945
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || ||||| ||||||||||| |||| || | | | || || | ||
Sbjct 21886198 TGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGT 21886257
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||| | || || || || || || || || || || || |||||
Sbjct 21886258 TTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTG 21886317
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||||| | || || || ||||||| || ||||| ||
Sbjct 21886318 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCTGTG 21886377
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 21886378 AGGGTTTTCACAAAGATCTGCAT 21886400
>seq6
Length=78779235
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || ||||| || || || ||||||||||| || | ||| || |||| || | |||
Sbjct 3703968 TGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATCTTCAAGCTGC 3703909
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| ||||| || ||||| | ||| ||||| |||||||| || || ||||| || || ||
Sbjct 3703908 TTCCCTGCGAAGATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTTATCCTGTATCTTC 3703849
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||||| | ||||| || | |||| ||| || || ||
Sbjct 3703848 GCCTTGACGTTGTCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCCGTC 3703789
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||||||||||||
Sbjct 3703788 AAGGTCTTGACAAATATCTGCAT 3703766
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| || ||||| || || ||||||||||| || | ||| | | | || || | |||
Sbjct 3703513 ATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTG 3703454
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| || || || || | | || || || || |||||||| || || ||||| || ||
Sbjct 3703453 TTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 3703394
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||| || || | || || || ||||||| ||||| |||||
Sbjct 3703393 GGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTCCGGT 3703334
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
|| || || ||||| || ||||||
Sbjct 3703333 TAGGGTCTTGACAAAAATTTGCATG 3703309
>seq5
Length=131469567
Score = 102 bits (112), Expect = 6e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||||||||| | | ||||||| |||||| || || ||||| ||||| |||||||| |
Sbjct 77212196 TTCCTCCTCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAG 77212137
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| | || || |||| ||||||||||| || ||||| || | | ||| ||||| || |
Sbjct 77212136 CCAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGATCAGGAG 77212077
Query 101361 GAATGCCTTCTTTATCTTG 101379
| || || |||||||| ||
Sbjct 77212076 GTATACCCTCTTTATCCTG 77212058
>seq9
Length=68543460
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 101284 TTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAA 101343
||| || | ||||||||| | ||| | | ||||||| ||| || || |||||||||
Sbjct 1094496 TTGGATGTCGTAATCGGCTACGGTTTTATCTTCGTCCAGTTGATTCCCGCCAAATATCAG 1094555
Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403
|||||| || ||| |||| ||||||| || ||||| || | | | | || |
Sbjct 1094556 ACGCTGCTGGTCGACGGGAACCCCTTCTTGCTCCTGAATCTTGAGCTCGATATCGTCGAT 1094615
Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463
|||| | |||||||| || |||| ||| || ||| || |||||||||||| ||
Sbjct 1094616 TCTGTCGCTGCTCTCCACTTCGAGGGTGATCGTCTTCTCGGATAGAGTTTTTACAAAGAT 1094675
Query 101464 CTGCAT 101469
||||||
Sbjct 1094676 CTGCAT 1094681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396221448849744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |