Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8 122 7e-23 seq3 122 7e-23 seq6 118 8e-22 seq5 102 6e-17 seq9 87.8 1e-12 >seq8 Length=131339754 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || ||||| || ||||| ||||||| ||| | |||| || | || Sbjct 3136246 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTCAAGCTG 3136305 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | | ||| || || || |||||||| || || || || ||||| Sbjct 3136306 CTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTT 3136365 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||| | || || ||||| |||| ||||||||||| Sbjct 3136366 GGCCTTGACATTGTCGATTGTGTCAGAGCTCTCAACCTCAAGCGTGATGGTTTTGCCGGT 3136425 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 3136426 CAAGGTCTTGACAAAAATCTGCATG 3136450 >seq3 Length=113259003 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || || || || ||||| || || | || | | |||| ||| Sbjct 21885736 ACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCC 21885795 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || ||||| |||| | ||| || || || || ||||| || || || ||| Sbjct 21885796 AACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGA 21885855 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||||||| | || | ||||| || | ||||||||||| |||| || ||| Sbjct 21885856 ATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACTTCAAGGGTGATAGTCTTG 21885915 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 21885916 CCAGTGAGGGTCTTGACAAAAATCTGCATG 21885945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || ||||| ||||||||||| |||| || | | | || || | || Sbjct 21886198 TGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGT 21886257 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | || || || || || || || || || || || ||||| Sbjct 21886258 TTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTG 21886317 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||||| | || || || ||||||| || ||||| || Sbjct 21886318 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCTGTG 21886377 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 21886378 AGGGTTTTCACAAAGATCTGCAT 21886400 >seq6 Length=78779235 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || ||||||||||| || | ||| || |||| || | ||| Sbjct 3703968 TGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATCTTCAAGCTGC 3703909 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||||| || ||||| | ||| ||||| |||||||| || || ||||| || || || Sbjct 3703908 TTCCCTGCGAAGATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTTATCCTGTATCTTC 3703849 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||| | ||||| || | |||| ||| || || || Sbjct 3703848 GCCTTGACGTTGTCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCCGTC 3703789 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||||||||| Sbjct 3703788 AAGGTCTTGACAAATATCTGCAT 3703766 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || || ||||||||||| || | ||| | | | || || | ||| Sbjct 3703513 ATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTG 3703454 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || || || | | || || || || |||||||| || || ||||| || || Sbjct 3703453 TTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 3703394 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| || || | || || || ||||||| ||||| ||||| Sbjct 3703393 GGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTCCGGT 3703334 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| || |||||| Sbjct 3703333 TAGGGTCTTGACAAAAATTTGCATG 3703309 >seq5 Length=131469567 Score = 102 bits (112), Expect = 6e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | ||||||| |||||| || || ||||| ||||| |||||||| | Sbjct 77212196 TTCCTCCTCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAG 77212137 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || || |||| ||||||||||| || ||||| || | | ||| ||||| || | Sbjct 77212136 CCAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGATCAGGAG 77212077 Query 101361 GAATGCCTTCTTTATCTTG 101379 | || || |||||||| || Sbjct 77212076 GTATACCCTCTTTATCCTG 77212058 >seq9 Length=68543460 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 101284 TTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAA 101343 ||| || | ||||||||| | ||| | | ||||||| ||| || || ||||||||| Sbjct 1094496 TTGGATGTCGTAATCGGCTACGGTTTTATCTTCGTCCAGTTGATTCCCGCCAAATATCAG 1094555 Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403 |||||| || ||| |||| ||||||| || ||||| || | | | | || | Sbjct 1094556 ACGCTGCTGGTCGACGGGAACCCCTTCTTGCTCCTGAATCTTGAGCTCGATATCGTCGAT 1094615 Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 |||| | |||||||| || |||| ||| || ||| || |||||||||||| || Sbjct 1094616 TCTGTCGCTGCTCTCCACTTCGAGGGTGATCGTCTTCTCGGATAGAGTTTTTACAAAGAT 1094675 Query 101464 CTGCAT 101469 |||||| Sbjct 1094676 CTGCAT 1094681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396221448849744