Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 109 4e-19 seq8 89.7 4e-13 >seq3 Length=113259003 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||||||||| || || ||| || || || ||||| |||| Sbjct 21885717 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 21885776 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || ||||||||||| || ||||| ||||| | ||| || || | ||| Sbjct 21885777 AAGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGG 21885836 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| ||||||| | | | ||||| |||||| Sbjct 21885837 GATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 21885896 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || |||||||||||||| Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||||||||| || || ||| || || || || || |||| Sbjct 21885945 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGC 21886004 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || || | |||||| || ||||| ||||| | ||| || || | ||| Sbjct 21886005 GAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 21886064 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| ||||||| | | | || || ||| || Sbjct 21886065 GATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCGGAGCTCTCAAC 21886124 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | |||||||| || || || | || || || |||||||||||| Sbjct 21886125 CTCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCATC 21886173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| ||||| ||||||||||||| || | || |||| || | ||| Sbjct 21886198 TGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGT 21886257 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| ||||||| || || || | ||| | ||||||||||| || || Sbjct 21886258 TTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTG 21886317 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || || ||| ||||| | || || || || || || Sbjct 21886318 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCTGTG 21886377 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||||| ||||| ||||||||| Sbjct 21886378 AGGGTTTTCACAAAGATCTGCATC 21886401 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| || ||| | || || ||| ||| || || || || || |||| Sbjct 21885489 GCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 21885548 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| |||||||| |||| | ||| || || | ||| Sbjct 21885549 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 21885608 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| ||| ||| | | | || || |||||| Sbjct 21885609 GATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCAC 21885668 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | || || |||||||||||||| Sbjct 21885669 TTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 >seq8 Length=131339754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || |||||||| | || |||| |||| || | |||||| || || || Sbjct 3135802 CTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAA 3135861 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||||| ||| | ||||||||| || ||||| || ||| Sbjct 3135862 GATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTGGCCTTGACATT 3135921 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| ||||| |||||||| |||| || || || Sbjct 3135922 GTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTTTTTCCTGTCAGGGTCTTAAC 3135981 Query 48755 AAAAATCTGCAT 48766 ||||| ||||| Sbjct 3135982 GAAAATTTGCAT 3135993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||| | || || ||| ||| || || || ||||| |||| Sbjct 3136678 GCCACCCCTGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3136737 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || || | ||||| || || || || || | ||| || || | ||| Sbjct 3136738 GAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGCCTCTGCTGGTCTGGGGG 3136797 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| ||| ||| | | || ||||| |||||| Sbjct 3136798 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGCTCTCCAC 3136857 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || ||||| || | || || ||||| ||||||||| Sbjct 3136858 CTCAAGGGTGATAGTCTTTCCTGTAAGTGTCTTCACAAAGATCTGCATC 3136906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380882853552816