Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 4e-19
seq8 89.7 4e-13
>seq3
Length=113259003
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| |||| | ||||||||| || || ||| || || || ||||| ||||
Sbjct 21885717 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 21885776
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || ||||||||||| || ||||| ||||| | ||| || || | |||
Sbjct 21885777 AAGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGG 21885836
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||||||| |||||| ||||||| | | | ||||| ||||||
Sbjct 21885837 GATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 21885896
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || || | || || ||||||||||||||
Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| |||| | ||||||||| || || ||| || || || || || ||||
Sbjct 21885945 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGC 21886004
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| |||| | || || | |||||| || ||||| ||||| | ||| || || | |||
Sbjct 21886005 GAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 21886064
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| ||||| ||||||| | | | || || ||| ||
Sbjct 21886065 GATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCGGAGCTCTCAAC 21886124
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | |||||||| || || || | || || || ||||||||||||
Sbjct 21886125 CTCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCATC 21886173
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| ||||| ||||||||||||| || | || |||| || | |||
Sbjct 21886198 TGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGT 21886257
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| |||||||| ||||||| || || || | ||| | ||||||||||| || ||
Sbjct 21886258 TTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTG 21886317
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | | || || ||| ||||| | || || || || || ||
Sbjct 21886318 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCTGTG 21886377
Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767
| ||||| ||||| |||||||||
Sbjct 21886378 AGGGTTTTCACAAAGATCTGCATC 21886401
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| |||| || ||| | || || ||| ||| || || || || || ||||
Sbjct 21885489 GCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 21885548
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || || | |||||| |||||||| |||| | ||| || || | |||
Sbjct 21885549 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 21885608
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| |||||| ||| ||| | | | || || ||||||
Sbjct 21885609 GATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCAC 21885668
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || || || || || | || || ||||||||||||||
Sbjct 21885669 TTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716
>seq8
Length=131339754
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| ||||| || |||||||| | || |||| |||| || | |||||| || || ||
Sbjct 3135802 CTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAA 3135861
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || | ||| ||||||| ||| | ||||||||| || ||||| || |||
Sbjct 3135862 GATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTGGCCTTGACATT 3135921
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || ||||||||||| ||||| |||||||| |||| || || ||
Sbjct 3135922 GTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTTTTTCCTGTCAGGGTCTTAAC 3135981
Query 48755 AAAAATCTGCAT 48766
||||| |||||
Sbjct 3135982 GAAAATTTGCAT 3135993
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | ||| | || || ||| ||| || || || ||||| ||||
Sbjct 3136678 GCCACCCCTGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3136737
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || || | ||||| || || || || || | ||| || || | |||
Sbjct 3136738 GAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGCCTCTGCTGGTCTGGGGG 3136797
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||||||| ||||| ||| ||| | | || ||||| ||||||
Sbjct 3136798 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGCTCTCCAC 3136857
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | || || || ||||| || | || || ||||| |||||||||
Sbjct 3136858 CTCAAGGGTGATAGTCTTTCCTGTAAGTGTCTTCACAAAGATCTGCATC 3136906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380882853552816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |