Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 140 6e-28 >seq2 Length=84732013 Score = 140 bits (154), Expect = 6e-28 Identities = 380/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 ||| | || ||| || || || | || | ||||||||| || |||||| |||| || Sbjct 24868684 ATACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGA 24868625 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| | || ||||| | || | || ||| ||||||||||| || | |||| || Sbjct 24868624 AAAGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCC 24868566 Query 48241 AG-AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 | ||||||| || || || || || || ||| | | ||||| ||||||| Sbjct 24868565 CGGAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---- 24868510 Query 48300 TCTT-GTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 ||| | | |||||| |||||||| || |||||||| || ||| || || ||| Sbjct 24868509 TCTGAGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTC 24868450 Query 48359 TCTATGGCCCGGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGC 48415 || ||||| | || || |||| ||| | | |||| | |||| ||| Sbjct 24868449 TCGATGGCGTGAAAAAGGCGGCTCTTT---TCATCGGAGTCCTTGATGTAGGATTCGAGG 24868393 Query 48416 AGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCC 48475 || | ||||||||| ||||| | ||||| || ||||||||||| |||||||||||| Sbjct 24868392 AGAAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCC 24868333 Query 48476 CTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTAT 48534 |||||||| ||||| || || | ||| | || || || ||||| ||| || Sbjct 24868332 CTGGCCTCGGCGACCTGGACCTCCTTCATGAAAC-GGCCGGCGAGGTTCTCCAGGACGAT 24868274 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || || || || || |||||||| ||||| || | | ||| |||||||||| | ||| Sbjct 24868273 GCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGT 24868214 Query 48595 GAGAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAA 48651 || | | |||| | | |||| || || || || || || | |||||||| Sbjct 24868213 TAGGGTTTGGTCCCAGTGGCGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAA 24868154 Query 48652 GGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || || |||||||| |||| || Sbjct 24868153 CGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 24868121 Score = 140 bits (154), Expect = 6e-28 Identities = 380/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Plus Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 ||| | || ||| || || || | || | ||||||||| || |||||| |||| || Sbjct 26602942 ATACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGA 26603001 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| | || ||||| | || | || ||| ||||||||||| || | |||| || Sbjct 26603002 AAAGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCC 26603060 Query 48241 AG-AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 | ||||||| || || || || || || ||| | | ||||| ||||||| Sbjct 26603061 CGGAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---- 26603116 Query 48300 TCTT-GTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 ||| | | |||||| |||||||| || |||||||| || ||| || || ||| Sbjct 26603117 TCTGAGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTC 26603176 Query 48359 TCTATGGCCCGGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGC 48415 || ||||| | || || |||| ||| | | |||| | |||| ||| Sbjct 26603177 TCGATGGCGTGAAAAAGGCGGCTCTTT---TCATCGGAGTCCTTGATGTAGGATTCGAGG 26603233 Query 48416 AGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCC 48475 || | ||||||||| ||||| | ||||| || ||||||||||| |||||||||||| Sbjct 26603234 AGAAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCC 26603293 Query 48476 CTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTAT 48534 |||||||| ||||| || || | ||| | || || || ||||| ||| || Sbjct 26603294 CTGGCCTCGGCGACCTGGACCTCCTTCATGAAAC-GGCCGGCGAGGTTCTCCAGGACGAT 26603352 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || || || || || |||||||| ||||| || | | ||| |||||||||| | ||| Sbjct 26603353 GCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGT 26603412 Query 48595 GAGAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAA 48651 || | | |||| | | |||| || || || || || || | |||||||| Sbjct 26603413 TAGGGTTTGGTCCCAGTGGCGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAA 26603472 Query 48652 GGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || || |||||||| |||| || Sbjct 26603473 CGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 26603505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931395492065280