Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 >seq2 Length=84732013 Score = 138 bits (152), Expect = 2e-27 Identities = 377/567 (66%), Gaps = 18/567 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535 || |||||||||||||||||||| | ||| |||||||||||| ||| | ||||| Sbjct 24868121 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 24868180 Query 25536 GGCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||| || || | |||| || | ||| || ||||||| || || ||| Sbjct 24868181 AGCCAA-GATATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 24868239 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||| || || | Sbjct 24868240 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 24868299 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| || ||||||| | |||||||| |||||||| ||||| Sbjct 24868300 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 24868359 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| | |||||| | || | ||||| | ||| Sbjct 24868360 CGAGAACATCCACTCCGAGATGTA---CTCGCTTCTCCTCGAATCCTACATCAAGGACTC 24868416 Query 25770 CGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | | |||| || || ||| ||||||||| ||| || || || | ||||| Sbjct 24868417 CGATGAAAAGAG-CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGG 24868475 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| ||||||||||| | || ||||| | || | |||| | || | Sbjct 24868476 CCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG----TCTTTCGCCGAGAGATTGATC 24868531 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || |||||| || || || || || ||| ||| ||| ||||| |||||||| Sbjct 24868532 GCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTT 24868591 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || || ||||| ||| | |||||| ||||||||||| | ||||| Sbjct 24868592 AAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAA 24868651 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTG 26034 || ||||| | ||||| || ||| || Sbjct 24868652 GGCCTCCATTGCGATTTCGCTTGCTTG 24868678 Score = 138 bits (152), Expect = 2e-27 Identities = 377/567 (66%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535 || |||||||||||||||||||| | ||| |||||||||||| ||| | ||||| Sbjct 26603505 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 26603446 Query 25536 GGCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||| || || | |||| || | ||| || ||||||| || || ||| Sbjct 26603445 AGCCAA-GATATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 26603387 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||| || || | Sbjct 26603386 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 26603327 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| || ||||||| | |||||||| |||||||| ||||| Sbjct 26603326 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 26603267 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| | |||||| | || | ||||| | ||| Sbjct 26603266 CGAGAACATCCACTCCGAGATGTA---CTCGCTTCTCCTCGAATCCTACATCAAGGACTC 26603210 Query 25770 CGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | | |||| || || ||| ||||||||| ||| || || || | ||||| Sbjct 26603209 CGATGAAAAGAG-CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGG 26603151 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| ||||||||||| | || ||||| | || | |||| | || | Sbjct 26603150 CCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG----TCTTTCGCCGAGAGATTGATC 26603095 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || |||||| || || || || || ||| ||| ||| ||||| |||||||| Sbjct 26603094 GCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTT 26603035 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || || ||||| ||| | |||||| ||||||||||| | ||||| Sbjct 26603034 AAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAA 26602975 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTG 26034 || ||||| | ||||| || ||| || Sbjct 26602974 GGCCTCCATTGCGATTTCGCTTGCTTG 26602948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928707888276480