Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 2e-27
>seq2
Length=84732013
Score = 138 bits (152), Expect = 2e-27
Identities = 377/567 (66%), Gaps = 18/567 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535
|| |||||||||||||||||||| | ||| |||||||||||| ||| | |||||
Sbjct 24868121 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 24868180
Query 25536 GGCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||| || || | |||| || | ||| || ||||||| || || |||
Sbjct 24868181 AGCCAA-GATATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 24868239
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| | || ||||| || ||||| || || || || ||||| || || |
Sbjct 24868240 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 24868299
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | ||| || ||| || ||||||| | |||||||| |||||||| |||||
Sbjct 24868300 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 24868359
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGT 25769
||| || | ||||| ||| |||| | |||||| | || | ||||| | |||
Sbjct 24868360 CGAGAACATCCACTCCGAGATGTA---CTCGCTTCTCCTCGAATCCTACATCAAGGACTC 24868416
Query 25770 CGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828
|| | | |||| || || ||| ||||||||| ||| || || || | |||||
Sbjct 24868417 CGATGAAAAGAG-CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGG 24868475
Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
| |||||| ||||||||||| | || ||||| | || | |||| | || |
Sbjct 24868476 CCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG----TCTTTCGCCGAGAGATTGATC 24868531
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947
|| |||||| || || || || || ||| ||| ||| ||||| ||||||||
Sbjct 24868532 GCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTT 24868591
Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007
|| || || ||||| ||| | |||||| ||||||||||| | |||||
Sbjct 24868592 AAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAA 24868651
Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTG 26034
|| ||||| | ||||| || ||| ||
Sbjct 24868652 GGCCTCCATTGCGATTTCGCTTGCTTG 24868678
Score = 138 bits (152), Expect = 2e-27
Identities = 377/567 (66%), Gaps = 18/567 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535
|| |||||||||||||||||||| | ||| |||||||||||| ||| | |||||
Sbjct 26603505 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 26603446
Query 25536 GGCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||| || || | |||| || | ||| || ||||||| || || |||
Sbjct 26603445 AGCCAA-GATATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 26603387
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| | || ||||| || ||||| || || || || ||||| || || |
Sbjct 26603386 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 26603327
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | ||| || ||| || ||||||| | |||||||| |||||||| |||||
Sbjct 26603326 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 26603267
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGT 25769
||| || | ||||| ||| |||| | |||||| | || | ||||| | |||
Sbjct 26603266 CGAGAACATCCACTCCGAGATGTA---CTCGCTTCTCCTCGAATCCTACATCAAGGACTC 26603210
Query 25770 CGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828
|| | | |||| || || ||| ||||||||| ||| || || || | |||||
Sbjct 26603209 CGATGAAAAGAG-CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGG 26603151
Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
| |||||| ||||||||||| | || ||||| | || | |||| | || |
Sbjct 26603150 CCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG----TCTTTCGCCGAGAGATTGATC 26603095
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947
|| |||||| || || || || || ||| ||| ||| ||||| ||||||||
Sbjct 26603094 GCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTT 26603035
Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007
|| || || ||||| ||| | |||||| ||||||||||| | |||||
Sbjct 26603034 AAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAA 26602975
Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTG 26034
|| ||||| | ||||| || ||| ||
Sbjct 26602974 GGCCTCCATTGCGATTTCGCTTGCTTG 26602948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928707888276480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |