Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq3 87.8 2e-12 seq2 82.4 9e-11 >seq8 Length=131339754 Score = 107 bits (118), Expect = 2e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||||||||||||||| || ||||| ||| ||||| ||||| || | | || Sbjct 3128219 TTTGTGGAGATGTTTGTTGGAGTTGGTGCTTCAAGAGTTCGTGATCTTTTCAAGAAGGCA 3128160 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || ||||| || |||||||||||||||| || || | ||| | Sbjct 3128159 AAAGAGAATGCACCTTGCATTGTATTTGTTGATGAGATTGATGCTGTTGGGAGACAAAGA 3128100 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | |||| | || |||||||| |||||||| || | ||||| || | ||| Sbjct 3128099 GGAACTGGAATTGGCGGAGGGAATGACGAAAGAGAACAGACTCTCAATCAGCTTTTAACC 3128040 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| || || | || || || | || | || || || ||||| | Sbjct 3128039 GAGATGGATGGTTTCGAAGGAAATACCGGGGTTATTGTGGTCGCAGCTACCAATCGTGCT 3127980 Query 175636 GATATCCTTGAT 175647 |||||||| ||| Sbjct 3127979 GATATCCTAGAT 3127968 >seq3 Length=113259003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 175467 ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--T 175524 ||||||| | || ||||| |||||||||||||| ||||| | |||| | | |||| | Sbjct 762367 ACCATGTCTAGTTTTCATAGATGAGATTGATGCAGTGGGAAGGCAAAGAGGGACTGGAAT 762426 Query 175525 GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGAT 175584 | | | || |||||| || ||||| |||||| | || || |||| ||||| |||||| Sbjct 762427 TGGAGG--AGGAAATGATGAAAGAGAGCAAACACTAAACCAGTTACTTACCGAAATGGAT 762484 Query 175585 GGCTTTGACAAT---GAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATC 175641 ||||| || | || | || || | |||||||| || || || || || || Sbjct 762485 GGCTT---CAGTGGGGATAGCGGGGTTATTGTTATTGCCGCAACAAACCGACCTGAAATT 762541 Query 175642 CTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 |||||| ||| | ||| | || || | ||||| || Sbjct 762542 CTTGATTCAGCCTTGCTTAGACCAGGGAGGTTTGACCG 762579 >seq2 Length=84732013 Score = 82.4 bits (90), Expect = 9e-11 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 64974 TGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAA 65033 |||||||| | | ||| | |||||| | || | || || | | |||||||| | Sbjct 24868420 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 24868479 Query 65034 ATGGGCAATGAAATGGTTTGA---CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGC 65090 ||||| |||| ||| | || | || ||||| ||||||||| | | | || Sbjct 24868480 GTGGGCGCTGAAGTGGATCGATGGCTCAGAGTCT------TTCGCCGAGAGATTGATCGC 24868533 Query 65091 GTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAA 65150 ||||| || || || || || |||||||||||| || || || |||| ||| | || Sbjct 24868534 TTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTTAA 24868593 Query 65151 GAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 ||||| || | ||||| || || ||| ||||| || || || || ||||| || || Sbjct 24868594 AAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGG 24868653 Query 65211 TCTCCA 65216 ||||| Sbjct 24868654 CCTCCA 24868659 Score = 82.4 bits (90), Expect = 9e-11 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 64974 TGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAA 65033 |||||||| | | ||| | |||||| | || | || || | | |||||||| | Sbjct 26603206 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 26603147 Query 65034 ATGGGCAATGAAATGGTTTGA---CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGC 65090 ||||| |||| ||| | || | || ||||| ||||||||| | | | || Sbjct 26603146 GTGGGCGCTGAAGTGGATCGATGGCTCAGAGTCT------TTCGCCGAGAGATTGATCGC 26603093 Query 65091 GTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAA 65150 ||||| || || || || || |||||||||||| || || || |||| ||| | || Sbjct 26603092 TTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTTAA 26603033 Query 65151 GAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 ||||| || | ||||| || || ||| ||||| || || || || ||||| || || Sbjct 26603032 AAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGG 26602973 Query 65211 TCTCCA 65216 ||||| Sbjct 26602972 CCTCCA 26602967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596481665640960