Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 2e-18
seq3 87.8 2e-12
seq2 82.4 9e-11
>seq8
Length=131339754
Score = 107 bits (118), Expect = 2e-18
Identities = 175/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
|||||||||||||||||||| || ||||| ||| ||||| ||||| || | | ||
Sbjct 3128219 TTTGTGGAGATGTTTGTTGGAGTTGGTGCTTCAAGAGTTCGTGATCTTTTCAAGAAGGCA 3128160
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515
|| ||| ||| || ||||| || |||||||||||||||| || || | ||| |
Sbjct 3128159 AAAGAGAATGCACCTTGCATTGTATTTGTTGATGAGATTGATGCTGTTGGGAGACAAAGA 3128100
Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575
| |||| | || |||||||| |||||||| || | ||||| || | |||
Sbjct 3128099 GGAACTGGAATTGGCGGAGGGAATGACGAAAGAGAACAGACTCTCAATCAGCTTTTAACC 3128040
Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635
||||||||||| || || | || || || | || | || || || ||||| |
Sbjct 3128039 GAGATGGATGGTTTCGAAGGAAATACCGGGGTTATTGTGGTCGCAGCTACCAATCGTGCT 3127980
Query 175636 GATATCCTTGAT 175647
|||||||| |||
Sbjct 3127979 GATATCCTAGAT 3127968
>seq3
Length=113259003
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/218 (70%), Gaps = 10/218 (5%)
Strand=Plus/Plus
Query 175467 ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--T 175524
||||||| | || ||||| |||||||||||||| ||||| | |||| | | |||| |
Sbjct 762367 ACCATGTCTAGTTTTCATAGATGAGATTGATGCAGTGGGAAGGCAAAGAGGGACTGGAAT 762426
Query 175525 GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGAT 175584
| | | || |||||| || ||||| |||||| | || || |||| ||||| ||||||
Sbjct 762427 TGGAGG--AGGAAATGATGAAAGAGAGCAAACACTAAACCAGTTACTTACCGAAATGGAT 762484
Query 175585 GGCTTTGACAAT---GAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATC 175641
||||| || | || | || || | |||||||| || || || || || ||
Sbjct 762485 GGCTT---CAGTGGGGATAGCGGGGTTATTGTTATTGCCGCAACAAACCGACCTGAAATT 762541
Query 175642 CTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679
|||||| ||| | ||| | || || | ||||| ||
Sbjct 762542 CTTGATTCAGCCTTGCTTAGACCAGGGAGGTTTGACCG 762579
>seq2
Length=84732013
Score = 82.4 bits (90), Expect = 9e-11
Identities = 166/246 (67%), Gaps = 9/246 (4%)
Strand=Plus/Plus
Query 64974 TGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAA 65033
|||||||| | | ||| | |||||| | || | || || | | |||||||| |
Sbjct 24868420 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 24868479
Query 65034 ATGGGCAATGAAATGGTTTGA---CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGC 65090
||||| |||| ||| | || | || ||||| ||||||||| | | | ||
Sbjct 24868480 GTGGGCGCTGAAGTGGATCGATGGCTCAGAGTCT------TTCGCCGAGAGATTGATCGC 24868533
Query 65091 GTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAA 65150
||||| || || || || || |||||||||||| || || || |||| ||| | ||
Sbjct 24868534 TTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTTAA 24868593
Query 65151 GAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210
||||| || | ||||| || || ||| ||||| || || || || ||||| || ||
Sbjct 24868594 AAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGG 24868653
Query 65211 TCTCCA 65216
|||||
Sbjct 24868654 CCTCCA 24868659
Score = 82.4 bits (90), Expect = 9e-11
Identities = 166/246 (67%), Gaps = 9/246 (4%)
Strand=Plus/Minus
Query 64974 TGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAA 65033
|||||||| | | ||| | |||||| | || | || || | | |||||||| |
Sbjct 26603206 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 26603147
Query 65034 ATGGGCAATGAAATGGTTTGA---CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGC 65090
||||| |||| ||| | || | || ||||| ||||||||| | | | ||
Sbjct 26603146 GTGGGCGCTGAAGTGGATCGATGGCTCAGAGTCT------TTCGCCGAGAGATTGATCGC 26603093
Query 65091 GTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAA 65150
||||| || || || || || |||||||||||| || || || |||| ||| | ||
Sbjct 26603092 TTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTGTGCCATTTTCTGGCTTAA 26603033
Query 65151 GAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210
||||| || | ||||| || || ||| ||||| || || || || ||||| || ||
Sbjct 26603032 AAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGG 26602973
Query 65211 TCTCCA 65216
|||||
Sbjct 26602972 CCTCCA 26602967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596481665640960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |