Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1 435 9e-118 seq2 430 4e-116 >seq1 Length=132393784 Score = 435 bits (482), Expect = 9e-118 Identities = 694/987 (70%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 61129423 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 61129482 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| || | || || | | | || ||| ||||| || Sbjct 61129483 GCACGGTTGATGATATCAGCCCAAGT-GTTAATAACACGACCCTGACTATCAACTACAGA 61129541 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||| ||| || ||||| || | ||||| | || || | Sbjct 61129542 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 61129601 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | ||||| || || || Sbjct 61129602 CCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAGGAACGAGAATTGTTGAA 61129661 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 61129662 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGT 61129721 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC--T 26233 ||||| ||||| || || | || || | ||| || | | || || ||||| | Sbjct 61129722 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGACTCGTTTTCAGTGGTTTCCCT 61129781 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 | | ||| || | || ||||| || ||||||||| || || | || ||||| Sbjct 61129782 G-ATTAAACTAG-AGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 61129839 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| || || ||| || ||||| ||||| || || || || ||||| |||||| Sbjct 61129840 ACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAAT 61129899 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||| ||||| ||||||||||| || || | |||||| |||||| ||||| ||| Sbjct 61129900 ACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 61129959 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || |||| |||||| | ||||| || || ||| || | | || |||| ||||||| Sbjct 61129960 TGACCGATAGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 61130019 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || | ||| || || | | || |||||||||| | || || Sbjct 61130020 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 61130079 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| || | ||||||||| | | ||| || | ||| || || || ||||||| | Sbjct 61130080 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTATAAC 61130139 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || || || | | | |||||||| || ||||||||||| | || || || ||| Sbjct 61130140 CATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAA 61130199 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||||||||| || | ||| || || ||||| || Sbjct 61130200 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGACCCAGAAACAGGT 61130259 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | Sbjct 61130260 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GA 61130318 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | |||| || ||||| | || ||||||||||| | || |||||||| Sbjct 61130319 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 61130378 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 || || || || | ||| | ||| || Sbjct 61130379 TTCGGTGCTGGTTATCCAGTTACAGAA 61130405 Score = 138 bits (152), Expect = 3e-28 Identities = 194/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 54531072 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 54531013 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| || | || || | | | || || ||| ||||| || Sbjct 54531012 GCACGGTTAATGATATCAGCCCAAGT-GTTAATAACATGACCTTGACTATCAACTACAGA 54530954 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||| ||| || |||| || | ||||| | || || | Sbjct 54530953 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCAAAGTACTAATACCTAAAGCAGTGAA 54530894 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || | |||||| ||| | ||||| || | ||||| || || || Sbjct 54530893 CCAGATACCTACTATAGGCCAAACAGCCAAGAAGAAGTGTAAGGAACGAGAATTGTTGAA 54530834 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAA 26145 ||| ||||| || || || |||| ||||| Sbjct 54530833 ACTAGCATATTGGAAGATCAATCGGCCAAA 54530804 >seq2 Length=84732013 Score = 430 bits (476), Expect = 4e-116 Identities = 693/987 (70%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 6465185 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 6465126 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| || | || || | | | || ||| ||||| || Sbjct 6465125 GCACGGTTGATGATATCAGCCCAAGT-GTTAATAACACGACCCTGACTATCAACTACAGA 6465067 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||| ||| || ||||| || | ||||| | || || | Sbjct 6465066 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 6465007 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | ||||| || || || Sbjct 6465006 CCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAGGAACGAGAATTGTTGAA 6464947 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 6464946 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGT 6464887 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC--T 26233 ||||| ||||| || || | || || | ||| || | | || || ||||| | Sbjct 6464886 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGACTCGTTTTCAGTGGTTTCCCT 6464827 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 | | ||| || | || ||||| || ||||||||| || || | || ||||| Sbjct 6464826 G-ATTAAACTAG-AGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 6464769 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| || || ||| || ||||| ||||| || || || || ||||| |||||| Sbjct 6464768 ACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAAT 6464709 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||| ||||| ||||||||||| || || | |||||| |||||| ||||| ||| Sbjct 6464708 ACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 6464649 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || |||| |||||| | ||||| || || ||| || | | || |||| ||||||| Sbjct 6464648 TGACCGATAGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 6464589 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || | ||| || || | | || |||||||||| | || || Sbjct 6464588 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 6464529 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| || | ||||||||| | | ||| || | ||| || || || ||||||| | Sbjct 6464528 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTATAAC 6464469 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || || || | | | |||||||| || ||||||||||| | || || || ||| Sbjct 6464468 CATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAA 6464409 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||||||||| || | ||| || || ||||| || Sbjct 6464408 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGACCCAGAAACAGGT 6464349 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| |||||||| || || || || ||||| || | ||||| ||| | Sbjct 6464348 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAAGCGATAATAAATACA-GA 6464290 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | |||| || ||||| | || ||||||||||| | || |||||||| Sbjct 6464289 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 6464230 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 || || || || | ||| | ||| || Sbjct 6464229 TTCGGTGCTGGTTATCCAGTTACAGAA 6464203 Score = 212 bits (234), Expect = 2e-50 Identities = 340/482 (71%), Gaps = 6/482 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 76525183 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 76525242 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATC-TTTCCATTAACATCTACTACTGA 25995 || ||||| | | ||||||||| || | || || | || | | ||| ||||| || Sbjct 76525243 GCACGGTTGATGATATCAGCCCAAGT-GTTAATAACACGACCCTGACTATCAACTACAGA 76525301 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||| ||| || ||||| || | ||||| | || || | Sbjct 76525302 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 76525361 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | ||||| || || || Sbjct 76525362 CCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAGGAACGAGAATTGTTGAA 76525421 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 76525422 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGT 76525481 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT--CT 26233 ||||| ||||| || || | || || | ||| || | | || || |||| || Sbjct 76525482 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGACTCGTTTTCAGTGGTTTCCCT 76525541 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 | | ||| | || || ||||| || ||||||||| || || | || ||||| Sbjct 76525542 G-ATTAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 76525599 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| || || ||| || ||||| ||||| || || || || ||||| |||||| Sbjct 76525600 ACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAAT 76525659 Query 26354 AC 26355 || Sbjct 76525660 AC 76525661 Score = 95.1 bits (104), Expect = 4e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || ||||| || ||||| || || ||| || ||||| ||||| || || || || ||| Sbjct 6465365 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCT 6465306 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || |||||||| | ||| ||||| ||||||||||| || || | |||||| |||||| Sbjct 6465305 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAG 6465246 Query 26405 AAACT 26409 ||||| Sbjct 6465245 AAACT 6465241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147691315888640