Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 131 5e-25 seq5 125 2e-23 seq4 105 2e-17 seq8 95.1 4e-14 >seq3 Length=113259003 Score = 131 bits (144), Expect = 5e-25 Identities = 266/392 (68%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 || || |||||||| || |||||||||||| |||| | | | | | || || ||| Sbjct 762465 TGGTTTAGTGTTTGCTCTCTTTCATCATTT---CCTCCTCCA--ATTCCAGTCCCT-CTT 762412 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | || || |||||||| || || ||||||| | ||| || || ||| | || Sbjct 762411 TGCCTTCCCACTGCATCAATCTCATCTATGAAAACTAGACATGGTGAGTTTGCCTTTGCC 762352 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | || || ||||| || | |||||||||| || ||| ||||||| | ||||| Sbjct 762351 TTGTTGAACAAATCTCTCACCCTTGATGCTCCAACTCCTACAAACATTTCAATGAATTCT 762292 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| | || | || ||| | || ||| || ||||||| || | ||||| || Sbjct 762291 GAACCTGACAAGGAAAAGAAGGGAACTCCTGCCTCCCCTGCTATGGCTTTAGCCAGCAGC 762232 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || ||||| |||||||| || || ||| |||||||| || || | | |||| ||| || Sbjct 762231 GTTTTACCAGTTCCAGGAGGGCCAACTAGAAGAACTCCTTTAGGAATTCTTGCTCCAACA 762172 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | | |||||||| ||| || || || |||||||| | | || | || ||| Sbjct 762171 GCAGCGAACTTCTCAGGTGACTTCAAGAACTCAACAATTTCTTTGAAATCTTGCTTGGCC 762112 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 || ||| ||| |||||||| |||| ||||| Sbjct 762111 TCGTCAACTCCAGCTACATCGTCAAATGTAAT 762080 >seq5 Length=131469567 Score = 125 bits (138), Expect = 2e-23 Identities = 317/473 (67%), Gaps = 12/473 (3%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933 || ||| |||||||||||| ||||| || |||| | ||| || | | || Sbjct 6257785 AAAGCTTTGTCTAATATATCACTCCTGTTGGTGCCTGCAAGTACCACCACCCCAGCAGTG 6257726 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | |||||||||||| ||| | |||||| || || ||| | ||||||||| Sbjct 6257725 GTCCCAAATCCATCCATCTCCACTAACAATTGATTCAGAGTGCTTTCACGTTCATCATTG 6257666 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 ||||| ||| | | ||| | ||| |||||||| ||||||||||| |||||| Sbjct 6257665 GAACC-AGAGAAAC-CTCGA----CCTCTTGCTTTACCAATGGCATCAATTTCATCAATG 6257612 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 ||||| | | |||| | ||| || || || ||||| | ||| || ||||| | Sbjct 6257611 AAAATTATGCTAGGAGCACATTGCCTGGCTTCTGTAAATAGGTTTCTCACCCGGGAAGGA 6257552 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 |||| ||||||| ||||||| | ||| |||||| | |||| |||| | || | || Sbjct 6257551 CCAACACCAACAAACATTTCCATAAAGTCAGAACCAGATA-TTGACAAAAACGGCACCCC 6257493 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 | ||| || || ||| | || ||||||||||| ||||| ||||| || || | | Sbjct 6257492 AGATTCACCAGCAGTTGCTTTTGCAAGAAGTGTCTTCCCTGTGCCAGGAGGGCCAACGAG 6257433 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAA 289290 ||| | || || || | ||| || ||||| ||| || |||| || | || | | Sbjct 6257432 AAGAGCACCTTTAGGAATTTTCGCTCCCAG--TTCTTCGTACTTCTTTGGATTTTTAAGA 6257375 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || | |||| ||| || ||| | ||| || |||||||| || || ||||| Sbjct 6257374 AAGTGCACAAACTCCATAATTTCTTGTTTAGCTTCATCACAGCCAGCAACATC 6257322 >seq4 Length=146560859 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| || | || ||||| || |||||||||||| | |||| ||||| Sbjct 138993762 GCAATGAGACCACATTTTTCGCAAACATGAACCCTGTAAGCATCACTTTGGTCAAATAGC 138993821 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | ||||| ||| ||| ||||| || | |||||| ||||| | |||||| || || Sbjct 138993822 CTTTCCTTGAGGAAATGAGCAGCACCATGAGCAATCATGCAATCTCTCTCCATCTCTCCA 138993881 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || || ||||| ||||| |||| ||| || || || ||||| Sbjct 138993882 AAGCGCAGACCTCCATCACGAGACCTTCCTTCTGCTGGCTG 138993922 Score = 98.7 bits (108), Expect = 3e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 60190 GGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTG 60249 ||| ||||||||||||||||| || ||||| || ||||||||| || || |||| ||| Sbjct 22939887 GGTGCCAAATTGTCCGTTTGGTTGAAATAGGTTGATGTTGTTACTCCCCACAAAATCTTG 22939946 Query 60250 AGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTC 60309 || | ||||| |||| | | ||| ||||| ||||||||| | ||||| || Sbjct 22939947 GGCCATTCCAACTATAGTGCTGACAAGACTTTGCTCACCATGATGATATGCCGAATGCTC 22940006 Query 60310 TGAAACATATCCACTGAATTGTGCGAC 60336 ||||||||| ||| |||||| || || Sbjct 22940007 TGAAACATAACCAGAGAATTGGGCCAC 22940033 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 156043 CAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGA 156099 ||||| |||| ||||||||||| ||| ||||| ||||| |||||||| | ||| || | Sbjct 9259147 CAAAATTACCCTTCCTCTTGCCTCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACA 9259088 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | | || ||| || | ||||||||| ||||| || || ||||| ||||||| Sbjct 9259087 CCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATAT 9259037 >seq8 Length=131339754 Score = 95.1 bits (104), Expect = 4e-14 Identities = 315/477 (66%), Gaps = 20/477 (4%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTTA- 288939 |||| ||||| || | || || ||||| | | |||||| |||| || ||| Sbjct 3127969 TCTAGGATATCAGCACGATTGGTAGCTGCGA---CCACAATAACCCCGGTATTTCCTTCG 3128025 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| ||||||| ||||| || || ||||| ||||| ||||| || Sbjct 3128026 AAACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCG 3128085 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| | | | ||| ||| | | |||||||||||||| || |||| || | Sbjct 3128086 CC--AATTCC---AGTTCCTC-TTTGTCTCCCAACAGCATCAATCTCATCAACAAATACA 3128139 Query 289060 ACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || || | ||| | | | || ||| ||| | || | || | || || |||| Sbjct 3128140 ATGCAAGGTGCATTCTCTTTTGCCTTCTTGAAAAGA--TCACGAACTCTTGAAGCACCAA 3128197 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 |||||| |||| || ||||| || || | || | |||| | |||| || ||| Sbjct 3128198 CTCCAACAAACATCTCCACAAACTCCGATCCTGA-AATTGAGAAAAATGGAACGCCAGCT 3128256 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || |||| |||| | || || | ||||| || ||||| || ||||| | ||| Sbjct 3128257 TCACCAGCTATTGCCTTTGCAAGCAAAGTCTTTCCAGTTCCTGGAGGTCCAATGAGAAGA 3128316 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA-AAATTC 289295 ||||| || || | | || ||| ||| || | |||| ||||| ||||| || || Sbjct 3128317 ACTCCTTTAGGAATTCGAGCACCAACAGCAGTAAACCTCTC-GGGCTTTTTAAGGAACTC 3128375 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| |||| || || | ||||| |||||| ||| || |||||| |||| || Sbjct 3128376 CACAACTTCCATAAAGTCTTGCTTTGCTTCATCAACTCCGGCGACATCATCAAATGT 3128432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471595230437904