Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 5e-25
seq5 125 2e-23
seq4 105 2e-17
seq8 95.1 4e-14
>seq3
Length=113259003
Score = 131 bits (144), Expect = 5e-25
Identities = 266/392 (68%), Gaps = 6/392 (2%)
Strand=Plus/Minus
Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023
|| || |||||||| || |||||||||||| |||| | | | | | || || |||
Sbjct 762465 TGGTTTAGTGTTTGCTCTCTTTCATCATTT---CCTCCTCCA--ATTCCAGTCCCT-CTT 762412
Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083
| | || || |||||||| || || ||||||| | ||| || || ||| | ||
Sbjct 762411 TGCCTTCCCACTGCATCAATCTCATCTATGAAAACTAGACATGGTGAGTTTGCCTTTGCC 762352
Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143
| || || ||||| || | |||||||||| || ||| ||||||| | |||||
Sbjct 762351 TTGTTGAACAAATCTCTCACCCTTGATGCTCCAACTCCTACAAACATTTCAATGAATTCT 762292
Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
||| | || | || ||| | || ||| || ||||||| || | ||||| ||
Sbjct 762291 GAACCTGACAAGGAAAAGAAGGGAACTCCTGCCTCCCCTGCTATGGCTTTAGCCAGCAGC 762232
Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263
|| ||||| |||||||| || || ||| |||||||| || || | | |||| ||| ||
Sbjct 762231 GTTTTACCAGTTCCAGGAGGGCCAACTAGAAGAACTCCTTTAGGAATTCTTGCTCCAACA 762172
Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323
| | |||||||| ||| || || || |||||||| | | || | || |||
Sbjct 762171 GCAGCGAACTTCTCAGGTGACTTCAAGAACTCAACAATTTCTTTGAAATCTTGCTTGGCC 762112
Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAAT 289355
|| ||| ||| |||||||| |||| |||||
Sbjct 762111 TCGTCAACTCCAGCTACATCGTCAAATGTAAT 762080
>seq5
Length=131469567
Score = 125 bits (138), Expect = 2e-23
Identities = 317/473 (67%), Gaps = 12/473 (3%)
Strand=Plus/Minus
Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933
|| ||| |||||||||||| ||||| || |||| | ||| || | | ||
Sbjct 6257785 AAAGCTTTGTCTAATATATCACTCCTGTTGGTGCCTGCAAGTACCACCACCCCAGCAGTG 6257726
Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993
| |||||||||||| ||| | |||||| || || ||| | |||||||||
Sbjct 6257725 GTCCCAAATCCATCCATCTCCACTAACAATTGATTCAGAGTGCTTTCACGTTCATCATTG 6257666
Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053
||||| ||| | | ||| | ||| |||||||| ||||||||||| ||||||
Sbjct 6257665 GAACC-AGAGAAAC-CTCGA----CCTCTTGCTTTACCAATGGCATCAATTTCATCAATG 6257612
Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113
||||| | | |||| | ||| || || || ||||| | ||| || ||||| |
Sbjct 6257611 AAAATTATGCTAGGAGCACATTGCCTGGCTTCTGTAAATAGGTTTCTCACCCGGGAAGGA 6257552
Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172
|||| ||||||| ||||||| | ||| |||||| | |||| |||| | || | ||
Sbjct 6257551 CCAACACCAACAAACATTTCCATAAAGTCAGAACCAGATA-TTGACAAAAACGGCACCCC 6257493
Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232
| ||| || || ||| | || ||||||||||| ||||| ||||| || || | |
Sbjct 6257492 AGATTCACCAGCAGTTGCTTTTGCAAGAAGTGTCTTCCCTGTGCCAGGAGGGCCAACGAG 6257433
Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAA 289290
||| | || || || | ||| || ||||| ||| || |||| || | || | |
Sbjct 6257432 AAGAGCACCTTTAGGAATTTTCGCTCCCAG--TTCTTCGTACTTCTTTGGATTTTTAAGA 6257375
Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
|| | |||| ||| || ||| | ||| || |||||||| || || |||||
Sbjct 6257374 AAGTGCACAAACTCCATAATTTCTTGTTTAGCTTCATCACAGCCAGCAACATC 6257322
>seq4
Length=146560859
Score = 105 bits (116), Expect = 2e-17
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|| || |||||||| || | || ||||| || |||||||||||| | |||| |||||
Sbjct 138993762 GCAATGAGACCACATTTTTCGCAAACATGAACCCTGTAAGCATCACTTTGGTCAAATAGC 138993821
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
| ||||| ||| ||| ||||| || | |||||| ||||| | |||||| || ||
Sbjct 138993822 CTTTCCTTGAGGAAATGAGCAGCACCATGAGCAATCATGCAATCTCTCTCCATCTCTCCA 138993881
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564
|| || ||||| ||||| |||| ||| || || || |||||
Sbjct 138993882 AAGCGCAGACCTCCATCACGAGACCTTCCTTCTGCTGGCTG 138993922
Score = 98.7 bits (108), Expect = 3e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 60190 GGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTG 60249
||| ||||||||||||||||| || ||||| || ||||||||| || || |||| |||
Sbjct 22939887 GGTGCCAAATTGTCCGTTTGGTTGAAATAGGTTGATGTTGTTACTCCCCACAAAATCTTG 22939946
Query 60250 AGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTC 60309
|| | ||||| |||| | | ||| ||||| ||||||||| | ||||| ||
Sbjct 22939947 GGCCATTCCAACTATAGTGCTGACAAGACTTTGCTCACCATGATGATATGCCGAATGCTC 22940006
Query 60310 TGAAACATATCCACTGAATTGTGCGAC 60336
||||||||| ||| |||||| || ||
Sbjct 22940007 TGAAACATAACCAGAGAATTGGGCCAC 22940033
Score = 95.1 bits (104), Expect = 4e-14
Identities = 88/111 (79%), Gaps = 3/111 (3%)
Strand=Plus/Minus
Query 156043 CAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGA 156099
||||| |||| ||||||||||| ||| ||||| ||||| |||||||| | ||| || |
Sbjct 9259147 CAAAATTACCCTTCCTCTTGCCTCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACA 9259088
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150
| | || ||| || | ||||||||| ||||| || || ||||| |||||||
Sbjct 9259087 CCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATAT 9259037
>seq8
Length=131339754
Score = 95.1 bits (104), Expect = 4e-14
Identities = 315/477 (66%), Gaps = 20/477 (4%)
Strand=Plus/Plus
Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTTA- 288939
|||| ||||| || | || || ||||| | | |||||| |||| || |||
Sbjct 3127969 TCTAGGATATCAGCACGATTGGTAGCTGCGA---CCACAATAACCCCGGTATTTCCTTCG 3128025
Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999
|| |||||||| ||||||| ||||| || || ||||| ||||| ||||| ||
Sbjct 3128026 AAACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCG 3128085
Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059
| ||| | | | ||| ||| | | |||||||||||||| || |||| || |
Sbjct 3128086 CC--AATTCC---AGTTCCTC-TTTGTCTCCCAACAGCATCAATCTCATCAACAAATACA 3128139
Query 289060 ACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117
| || || | ||| | | | || ||| ||| | || | || | || || ||||
Sbjct 3128140 ATGCAAGGTGCATTCTCTTTTGCCTTCTTGAAAAGA--TCACGAACTCTTGAAGCACCAA 3128197
Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176
|||||| |||| || ||||| || || | || | |||| | |||| || |||
Sbjct 3128198 CTCCAACAAACATCTCCACAAACTCCGATCCTGA-AATTGAGAAAAATGGAACGCCAGCT 3128256
Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236
|| || |||| |||| | || || | ||||| || ||||| || ||||| | |||
Sbjct 3128257 TCACCAGCTATTGCCTTTGCAAGCAAAGTCTTTCCAGTTCCTGGAGGTCCAATGAGAAGA 3128316
Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA-AAATTC 289295
||||| || || | | || ||| ||| || | |||| ||||| ||||| || ||
Sbjct 3128317 ACTCCTTTAGGAATTCGAGCACCAACAGCAGTAAACCTCTC-GGGCTTTTTAAGGAACTC 3128375
Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|||| |||| || || | ||||| |||||| ||| || |||||| |||| ||
Sbjct 3128376 CACAACTTCCATAAAGTCTTGCTTTGCTTCATCAACTCCGGCGACATCATCAAATGT 3128432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471595230437904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |