Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-64 seq8 118 1e-20 seq7 113 6e-19 seq4 111 2e-18 seq5 95.1 1e-13 >seq2 Length=84732013 Score = 264 bits (292), Expect = 1e-64 Identities = 237/297 (80%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| |||||||| |||| || || ||| Sbjct 24868374 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGG 24868315 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| |||||||| |||||||||||| ||||||||| Sbjct 24868314 ACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAG 24868255 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| ||||||||||||||| || | || | |||||||| Sbjct 24868254 AAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGG 24868195 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || |||||| || ||||||||||||||||||| ||||||||||||||| ||| Sbjct 24868194 CGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 24868135 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||||| | |||| ||| ||||| | | || |||| ||||||| Sbjct 24868134 TACATCTCCCAGATCGAGGGGTACTTGATCGGGAACATGCAGAATCGGTCGGGGTTG 24868078 Score = 264 bits (292), Expect = 1e-64 Identities = 237/297 (80%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| |||||||| |||| || || ||| Sbjct 26603252 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGG 26603311 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| |||||||| |||||||||||| ||||||||| Sbjct 26603312 ACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAG 26603371 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| ||||||||||||||| || | || | |||||||| Sbjct 26603372 AAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGG 26603431 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || |||||| || ||||||||||||||||||| ||||||||||||||| ||| Sbjct 26603432 CGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 26603491 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||||| | |||| ||| ||||| | | || |||| ||||||| Sbjct 26603492 TACATCTCCCAGATCGAGGGGTACTTGATCGGGAACATGCAGAATCGGTCGGGGTTG 26603548 Score = 122 bits (134), Expect = 1e-21 Identities = 197/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| || | ||||| ||||| | || ||||| | |||||||| Sbjct 24868653 CCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCGCGCTTT 24868594 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || ||||| || || || || ||||| || || || |||||| ||||| Sbjct 24868593 TTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAAA 24868534 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 |||| | | |||||| || | || ||| || ||||||||||| |||||| Sbjct 24868533 GCGATCAATCTCTCGGCGAAAGACTCTGAGCCATC------GATCCACTTCAGCGCCCAC 24868480 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| || || | || | || ||||||||| |||| ||| || |||||| Sbjct 24868479 TCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTCTTTTCA 24868420 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | |||||||| |||| |||| || ||||| || |||| Sbjct 24868419 TCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTC 24868376 Score = 122 bits (134), Expect = 1e-21 Identities = 197/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| || | ||||| ||||| | || ||||| | |||||||| Sbjct 26602973 CCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCGCGCTTT 26603032 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || ||||| || || || || ||||| || || || |||||| ||||| Sbjct 26603033 TTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAAA 26603092 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 |||| | | |||||| || | || ||| || ||||||||||| |||||| Sbjct 26603093 GCGATCAATCTCTCGGCGAAAGACTCTGAGCCATC------GATCCACTTCAGCGCCCAC 26603146 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| || || | || | || ||||||||| |||| ||| || |||||| Sbjct 26603147 TCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTCTTTTCA 26603206 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | |||||||| |||| |||| || ||||| || |||| Sbjct 26603207 TCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTC 26603250 Score = 118 bits (130), Expect = 1e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| ||||||||||||||| | | || Sbjct 2822271 GCTTGGCGAGCTCTCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGA 2822212 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCC-GATGCGGTCGAT 1254460 ||| |||||| || | ||||| ||| |||||| | ||| | | | |||| Sbjct 2822211 CGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGGGAGGCCTCCTGGGCCAGCTTC--TCGAA 2822154 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| ||||||||||||| | ||||| |||| | ||||| || | ||| || Sbjct 2822153 GATGTCGTTGATGAACGAGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCCGG 2822094 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 2822093 GTGGACCTGCTTCAGGACCTTGAAGATG 2822066 Score = 113 bits (124), Expect = 6e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| ||||||||||||||| | | || Sbjct 2624531 GCTTGGCGAGCTCTCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGA 2624590 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCC-GATGCGGTCGAT 1254460 ||| |||||| || | ||||| ||| |||||| | ||| | | | |||| Sbjct 2624591 CGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGGGAGGCCTCCTGGGCCAGCTTC--TCGAA 2624648 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||||| ||||| |||| | ||||| || | ||| || Sbjct 2624649 GATGTCGTTGATGAAGGAGTTCATGATGCCCATCGCCTTGCTCGAGATCCCGATGTCAGG 2624708 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||| || |||||| ||||| Sbjct 2624709 GTGCACCTGCTTCAGGACCTTGAAGATG 2624736 >seq8 Length=131339754 Score = 118 bits (130), Expect = 1e-20 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| ||||||||||||||| | | || Sbjct 128647871 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGA 128647930 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTC--GGTGCCGATGCGGTCGAT 1254460 | ||| |||||| || | ||||| || |||||| || | | | | |||| Sbjct 128647931 TGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGTGAGGCCTCCTGGGCCAGCTTC--TCGAA 128647988 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||||| | ||||| |||| | ||||| || | ||| || Sbjct 128647989 GATGTCGTTGATGAAGGAGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCCGG 128648048 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 128648049 GTGGACCTGCTTCAGGACCTTGAAGATG 128648076 Score = 113 bits (124), Expect = 6e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| ||||||||||||||| | | | Sbjct 128971631 GCTTGGCGAGCTCTCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTAA 128971690 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTC--GGTGCCGATGCGGTCGAT 1254460 | ||| |||||| || | ||||| || |||||| || | | | | |||| Sbjct 128971691 TGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGTGAGGCCTCCTGGGCCAGCTTC--TCGAA 128971748 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||||| ||||| |||| ||||||| || | |||||| Sbjct 128971749 GATGTCGTTGATGAAGGAGTTCATGATGCCCATCGCCTTGCTGGAGATCCCGATGTCGGG 128971808 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 128971809 GTGGACCTGCTTCAGGACCTTGAAGATG 128971836 >seq7 Length=151357931 Score = 113 bits (124), Expect = 6e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || || | |||| ||||||||||||||| | | || Sbjct 6110059 GCTTGGCGAGCTCCCCGGGGAGGACGAGCCTGACGGAGGTCTGGATCTCGCGGGAGGTGA 6110000 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCC-GATGCGGTCGAT 1254460 | ||| |||||| || | ||||| ||| |||||| | ||| | | | |||| Sbjct 6109999 TGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGGGAGGCCTCCTGGGCCAGCTTC--TCGAA 6109942 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| ||||||||||||| | ||||| |||| | ||||| || | ||| || Sbjct 6109941 GATGTCGTTGATGAACGAGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCCGG 6109882 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 6109881 GTGGACCTGCTTCAGGACCTTGAAGATG 6109854 Score = 113 bits (124), Expect = 6e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || || | |||| ||||||||||||||| | | || Sbjct 6216384 GCTTGGCGAGCTCCCCGGGGAGGACGAGCCTGACGGAGGTCTGGATCTCGCGGGAGGTGA 6216443 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCC-GATGCGGTCGAT 1254460 | ||| |||||| || | ||||| ||| |||||| | ||| | | | |||| Sbjct 6216444 TGGTGGGCTTCTTGTTGTAGCGGGCCAGGCGGGAGGCCTCCTGGGCCAGCTTC--TCGAA 6216501 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| ||||||||||||| | ||||| |||| | ||||| || | ||| || Sbjct 6216502 GATGTCGTTGATGAACGAGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCCGG 6216561 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 6216562 GTGGACCTGCTTCAGGACCTTGAAGATG 6216589 >seq4 Length=146560859 Score = 111 bits (122), Expect = 2e-18 Identities = 136/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||| |||| ||||||||||||| | | | ||| ||| |||||| || | ||| Sbjct 36029849 AGGCGGACGGAGGTCTGGATCTCGTGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCC 36029908 Query 1254429 AGACGGCCGGCCTCG-GTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1254486 || ||| |||||| | ||| | | | |||| |||||||||| ||||||||||||| Sbjct 36029909 AGGCGGGAGGCCTCCTGGGCCAGCTTC--TCGAAGATGTCGTTGATGAACGAGTTCATGA 36029966 Query 1254487 CCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||| |||| | ||||| || | ||| ||||| |||||||| || |||||| ||| Sbjct 36029967 TCCCCATCGCCTTGCTCGAGATCCCGATGTCCGGGTGGACCTGCTTCAGGACCTTGAAGA 36030026 Query 1254547 TG 1254548 || Sbjct 36030027 TG 36030028 >seq5 Length=131469567 Score = 95.1 bits (104), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | |||| |||||||||||| | || | || Sbjct 7577167 GCTTGGCTAGCTCCCCGGGCAGCACGAGCCTCACGCTGGTCTGGATCTCCCTCGAGGTGA 7577226 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCC-GATGCGGTCGAT 1254460 | ||| |||||| || | ||||| | | ||||||| | ||| | | | |||| Sbjct 7577227 TGGTGGGCTTCTTGTTGTAGCGGGCCAGCCTGGAGGCCTCGTGGGCCAGCTTC--TCGAA 7577284 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||||| ||| | |||| | |||| ||| | ||| || Sbjct 7577285 GATGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTCGAGACGCCGATGTCCGG 7577344 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| || |||||| ||||| Sbjct 7577345 GTGGACCTGCTTCAGGACCTTGAAGATG 7577372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106171493258064