Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 7e-30
seq3 120 3e-22
seq8 102 7e-17
>seq6
Length=78779235
Score = 145 bits (160), Expect = 7e-30
Identities = 162/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 24699 ATAC-GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757
|||| ||||||||||||| | ||||| |||||||| || || || || ||||| || |||
Sbjct 3702848 ATACAGATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAA 3702907
Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817
|| | ||||| | || | || ||| ||||||||| ||||| ||||| || ||||||
Sbjct 3702908 TCCTCTGACACCATCGACAATGTTAAAGCAAAGATCCAGGACAAGGAAGGGATCCCTCCC 3702967
Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877
|| || |||||| | ||||| || || |||||||| |||||| | | | | | |||
Sbjct 3702968 GACCAGCAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGAT 3703027
Query 24878 TATAACATTCAAAAGGAATCGACACTACA-CTTG 24910
|| ||||| |||||||| || || || || ||||
Sbjct 3703028 TACAACATCCAAAAGGAGTCTACCCTCCATCTTG 3703061
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || ||||| || ||| | || || || | ||
Sbjct 3703082 ATGCAGATCTTTGTCAAGACCCTGACTGGGAAAACCATAACGTTGGAGGTCGAGAGCTCC 3703141
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| || || || ||||| || ||
Sbjct 3703142 GATACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703201
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||||||||| || || ||||| |||||| | | || | || ||||||
Sbjct 3703202 CAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTTTGGCCGACTATAAC 3703261
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| ||||| || || || || | || ||| | |||| ||||||
Sbjct 3703262 ATTCAGAAGGAGTCAACCCTGCATCTTGTTTTGAGGCTGCGTGGAGGC 3703309
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| || ||||| || || || ||| | || || || | |
Sbjct 3703538 ATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTCT 3703597
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 3703598 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 3703657
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | ||||||||||| ||||| || |||||| | | | | ||||| |||
Sbjct 3703658 CAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACAAC 3703717
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| ||||| || ||||||||| || | | || |||||
Sbjct 3703718 ATTCAGAAGGAGTCGACCCTCCACTTGGTGCTGAGGCTTCGTGGAGG 3703764
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/208 (69%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | || || |||||||| ||||| || || || || || || | ||
Sbjct 3703310 ATGCAAATTTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTCC 3703369
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| || || || ||||| || ||
Sbjct 3703370 GATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703429
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | | ||||| || || ||||| || ||||| | | || | ||||| ||
Sbjct 3703430 CAAAGGCTTATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAAT 3703489
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || |||||||| || || || ||||
Sbjct 3703490 ATCCAGAAGGAATCCACTCTTCATCTTG 3703517
>seq3
Length=113259003
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| |||| || |||||||| || || || || | ||||| || | ||
Sbjct 21885488 ATGCAGATTTTTGTTAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885429
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||||||| ||||| || ||||| || || || ||
Sbjct 21885428 GACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 21885369
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || ||||| |||||| | ||| || | |||||||||
Sbjct 21885368 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGAACGTTGGCGGATTATAAC 21885309
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| || || || |||
Sbjct 21885308 ATTCAGAAGGAGTCCACCCTCCAC 21885285
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || || ||||| || || || || || || || || | ||
Sbjct 21885260 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 21885201
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || ||||| || |||
Sbjct 21885200 GACACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCGGACCAA 21885141
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||| || || |||||||||||| | | | | | || || |||
Sbjct 21885140 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGACGTACCCTCGCGGACTACAAC 21885081
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || ||||| ||| |||||
Sbjct 21885080 ATCCAGAAGGAGTCCACACTTCACCTGGTG 21885051
Score = 100 bits (110), Expect = 3e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || ||||| || || |
Sbjct 21886401 GATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTC 21886342
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || ||| || ||||| ||||| || || || || || || ||
Sbjct 21886341 TGACACCATTGATAATGTCAAAGCCAAAATCCAGGACAAGGAGGGGATCCCCCCTGACCA 21886282
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||||||||| |||||||| ||||| | | | | | ||||| ||
Sbjct 21886281 GCAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTACAA 21886222
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
|| |||||||| || ||||| |||
Sbjct 21886221 TATCCAAAAGGAGTCCACACTCCAC 21886197
>seq8
Length=131339754
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || ||||| || || || || ||||| || || || |
Sbjct 122669185 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 122669126
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 122669125 GACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGACCAG 122669066
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | || || || || || ||||| ||||| ||| | | | || || |||
Sbjct 122669065 CAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAAC 122669006
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
|| || ||||| ||||| || ||| | ||| | || | ||||||||||
Sbjct 122669005 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGCCTCCGCGGAGGCG 122668957
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || || || || ||||| || || || || || || | |
Sbjct 3136221 ATGCAGATCTTCGTTAAGACACTGACTGGCAAAACCATCACCCTTGAGGTCGAGAGCTCT 3136162
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| || || || |||||||| || || || || || ||
Sbjct 3136161 GACACAATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGTATCCCCCCAGACCAG 3136102
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | || ||||| ||||| ||||| ||||| | | | | ||||||| |||
Sbjct 3136101 CAGAGGCTCATTTTTGCGGGGAAGCAGCTTGAGGACGGCCGCACCCTAGCAGATTACAAC 3136042
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| |||||||| || || || ||| | || | || | || |||||
Sbjct 3136041 ATCCAAAAGGAGTCCACCCTCCACCTCGTTCTTCGGCTTCGTGGAGG 3135995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449831285093760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |