Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq3 120 3e-22 seq8 102 7e-17 >seq6 Length=78779235 Score = 145 bits (160), Expect = 7e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24699 ATAC-GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 |||| ||||||||||||| | ||||| |||||||| || || || || ||||| || ||| Sbjct 3702848 ATACAGATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAA 3702907 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 || | ||||| | || | || ||| ||||||||| ||||| ||||| || |||||| Sbjct 3702908 TCCTCTGACACCATCGACAATGTTAAAGCAAAGATCCAGGACAAGGAAGGGATCCCTCCC 3702967 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || |||||| | ||||| || || |||||||| |||||| | | | | | ||| Sbjct 3702968 GACCAGCAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGAT 3703027 Query 24878 TATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||| |||||||| || || || || |||| Sbjct 3703028 TACAACATCCAAAAGGAGTCTACCCTCCATCTTG 3703061 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || ||| | || || || | || Sbjct 3703082 ATGCAGATCTTTGTCAAGACCCTGACTGGGAAAACCATAACGTTGGAGGTCGAGAGCTCC 3703141 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || ||||| || || Sbjct 3703142 GATACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703201 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || ||||| |||||| | | || | || |||||| Sbjct 3703202 CAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTTTGGCCGACTATAAC 3703261 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || | || ||| | |||| |||||| Sbjct 3703262 ATTCAGAAGGAGTCAACCCTGCATCTTGTTTTGAGGCTGCGTGGAGGC 3703309 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || ||| | || || || | | Sbjct 3703538 ATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTCT 3703597 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 3703598 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 3703657 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| ||||| || |||||| | | | | ||||| ||| Sbjct 3703658 CAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACAAC 3703717 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||||||||| || | | || ||||| Sbjct 3703718 ATTCAGAAGGAGTCGACCCTCCACTTGGTGCTGAGGCTTCGTGGAGG 3703764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || |||||||| ||||| || || || || || || | || Sbjct 3703310 ATGCAAATTTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTCC 3703369 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || ||||| || || Sbjct 3703370 GATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703429 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || ||||| || ||||| | | || | ||||| || Sbjct 3703430 CAAAGGCTTATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAAT 3703489 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || |||||||| || || || |||| Sbjct 3703490 ATCCAGAAGGAATCCACTCTTCATCTTG 3703517 >seq3 Length=113259003 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || |||||||| || || || || | ||||| || | || Sbjct 21885488 ATGCAGATTTTTGTTAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885429 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||| ||||| || ||||| || || || || Sbjct 21885428 GACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 21885369 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || ||||| |||||| | ||| || | ||||||||| Sbjct 21885368 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGAACGTTGGCGGATTATAAC 21885309 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 21885308 ATTCAGAAGGAGTCCACCCTCCAC 21885285 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| || || || || || || || || | || Sbjct 21885260 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 21885201 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || ||| Sbjct 21885200 GACACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCGGACCAA 21885141 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||||||| | | | | | || || ||| Sbjct 21885140 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGACGTACCCTCGCGGACTACAAC 21885081 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || ||||| ||| ||||| Sbjct 21885080 ATCCAGAAGGAGTCCACACTTCACCTGGTG 21885051 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || ||||| || || | Sbjct 21886401 GATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTC 21886342 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||| ||||| || || || || || || || Sbjct 21886341 TGACACCATTGATAATGTCAAAGCCAAAATCCAGGACAAGGAGGGGATCCCCCCTGACCA 21886282 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||||| |||||||| ||||| | | | | | ||||| || Sbjct 21886281 GCAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTACAA 21886222 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || |||||||| || ||||| ||| Sbjct 21886221 TATCCAAAAGGAGTCCACACTCCAC 21886197 >seq8 Length=131339754 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| || || || || ||||| || || || | Sbjct 122669185 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 122669126 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 122669125 GACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGACCAG 122669066 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || || || || ||||| ||||| ||| | | | || || ||| Sbjct 122669065 CAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAAC 122669006 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| ||||| || ||| | ||| | || | |||||||||| Sbjct 122669005 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGCCTCCGCGGAGGCG 122668957 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || ||||| || || || || || || | | Sbjct 3136221 ATGCAGATCTTCGTTAAGACACTGACTGGCAAAACCATCACCCTTGAGGTCGAGAGCTCT 3136162 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || || || |||||||| || || || || || || Sbjct 3136161 GACACAATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGTATCCCCCCAGACCAG 3136102 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| ||||| ||||| ||||| | | | | ||||||| ||| Sbjct 3136101 CAGAGGCTCATTTTTGCGGGGAAGCAGCTTGAGGACGGCCGCACCCTAGCAGATTACAAC 3136042 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || ||| | || | || | || ||||| Sbjct 3136041 ATCCAAAAGGAGTCCACCCTCCACCTCGTTCTTCGGCTTCGTGGAGG 3135995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449831285093760