Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 2e-18
seq3 95.1 1e-14
seq6 82.4 6e-11
>seq8
Length=131339754
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||||||||| || || || | ||||| |||||||||||| | || |||| ||| |
Sbjct 3135993 ATGCAAATTTTCGTTAAGACCCTGACAGGAAAAACCATTACCTTGGAGGTGGAGAGCTCG 3135934
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | | || || ||||| ||||| || ||| | ||| ||||||
Sbjct 3135933 -GATACAATCGACAATGTCAAGGCCAAGATACAGGATAAGGAGGGCATCCCCCCGGATCA 3135875
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | || || || ||||| ||||||| | ||| | || || |||||
Sbjct 3135874 GCAGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGAACCCTTGCAGATTACAA 3135815
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| ||||||||||| || | ||| | |||
Sbjct 3135814 CATCCAAAAGGAGTCGACCCTTCACCTTGTG 3135784
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| || || ||||| |||||||| ||| | || ||| |||
Sbjct 3136677 ATGCAGATTTTTGTCAAGACCTTGACAGGAAAAACCATCACCCTTGAGGTCGAGAGCTC- 3136619
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || || || || || || || ||| | ||| ||| ||
Sbjct 3136618 CGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3136559
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || |||| ||| || || ||||| ||||| | | || | || ||||| ||
Sbjct 3136558 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCCTTGCTGACTATAA 3136499
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| ||||||||||| ||
Sbjct 3136498 CATCCAAAAGGAGTCGAC 3136481
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || |||||||| | || ||||| ||||| ||| |||| ||| |
Sbjct 122669188 AACATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 122669129
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| || ||| | | || || ||||| || || || || | ||| |||
Sbjct 122669128 TCGGACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGAC 122669069
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | || |||| ||||| || ||||| ||||||| | ||| | || ||||||
Sbjct 122669068 CAGCAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTAC 122669009
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| || |||||||| || | ||| | |||
Sbjct 122669008 AACATCCAGAAGGAGTCGACCCTCCACCTCGTG 122668976
>seq3
Length=113259003
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| || | || ||||| || || ||| | ||| |||| |||
Sbjct 21885944 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTCA 21885885
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | |||||| |||||| || || || ||| | ||| || ||
Sbjct 21885884 -GACACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCA 21885826
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || |||| ||| || || ||| ||||||| | | || | || ||||||||
Sbjct 21885825 GCAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAA 21885766
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || |||||||| || | || |||||
Sbjct 21885765 CATCCAGAAGGAGTCGACCCTCCATTTGGTG 21885735
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| || |||| ||||| ||||| || | ||| |||| |||
Sbjct 21885716 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCT-C 21885658
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || ||| |||||| || || || || | ||| || ||
Sbjct 21885657 CGACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 21885598
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | |||| ||| || || ||||| ||||| | | || | || ||||| ||
Sbjct 21885597 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTATAA 21885538
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770
||| || |||||||| || | ||| | ||| ||||
Sbjct 21885537 CATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGAG 21885502
>seq6
Length=78779235
Score = 82.4 bits (90), Expect = 6e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
|||||| ||||| |||||||| | || ||||| ||||| || | || ||| |||
Sbjct 3703537 AATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTC 3703596
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|| || ||| | | || || ||||| || || || ||| | ||| || |
Sbjct 3703597 T-GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 3703655
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| || || | ||| |||||||| || ||||| | | || | || || ||||
Sbjct 3703656 AGCAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACA 3703715
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770
||||||| |||||||| || | ||| ||||| ||||
Sbjct 3703716 ACATTCAGAAGGAGTCGACCCTCCACTTGGTGCTGAG 3703752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398819475420688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |