Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq3 95.1 1e-14 seq6 82.4 6e-11 >seq8 Length=131339754 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || || || | ||||| |||||||||||| | || |||| ||| | Sbjct 3135993 ATGCAAATTTTCGTTAAGACCCTGACAGGAAAAACCATTACCTTGGAGGTGGAGAGCTCG 3135934 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| ||||| || ||| | ||| |||||| Sbjct 3135933 -GATACAATCGACAATGTCAAGGCCAAGATACAGGATAAGGAGGGCATCCCCCCGGATCA 3135875 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | ||| | || || ||||| Sbjct 3135874 GCAGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGAACCCTTGCAGATTACAA 3135815 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| ||||||||||| || | ||| | ||| Sbjct 3135814 CATCCAAAAGGAGTCGACCCTTCACCTTGTG 3135784 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || ||||| |||||||| ||| | || ||| ||| Sbjct 3136677 ATGCAGATTTTTGTCAAGACCTTGACAGGAAAAACCATCACCCTTGAGGTCGAGAGCTC- 3136619 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || || || || || || ||| | ||| ||| || Sbjct 3136618 CGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3136559 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || || ||||| ||||| | | || | || ||||| || Sbjct 3136558 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCCTTGCTGACTATAA 3136499 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 3136498 CATCCAAAAGGAGTCGAC 3136481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || |||||||| | || ||||| ||||| ||| |||| ||| | Sbjct 122669188 AACATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 122669129 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || || || | ||| ||| Sbjct 122669128 TCGGACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGAC 122669069 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| ||||| || ||||| ||||||| | ||| | || |||||| Sbjct 122669068 CAGCAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTAC 122669009 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| | ||| Sbjct 122669008 AACATCCAGAAGGAGTCGACCCTCCACCTCGTG 122668976 >seq3 Length=113259003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || ||||| || || ||| | ||| |||| ||| Sbjct 21885944 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTCA 21885885 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | |||||| |||||| || || || ||| | ||| || || Sbjct 21885884 -GACACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCA 21885826 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || || ||| ||||||| | | || | || |||||||| Sbjct 21885825 GCAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAA 21885766 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | || ||||| Sbjct 21885765 CATCCAGAAGGAGTCGACCCTCCATTTGGTG 21885735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || |||| ||||| ||||| || | ||| |||| ||| Sbjct 21885716 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCT-C 21885658 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| |||||| || || || || | ||| || || Sbjct 21885657 CGACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 21885598 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| ||||| | | || | || ||||| || Sbjct 21885597 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTATAA 21885538 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||| || |||||||| || | ||| | ||| |||| Sbjct 21885537 CATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGAG 21885502 >seq6 Length=78779235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| |||||||| | || ||||| ||||| || | || ||| ||| Sbjct 3703537 AATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTC 3703596 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| || || || ||| | ||| || | Sbjct 3703597 T-GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 3703655 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| |||||||| || ||||| | | || | || || |||| Sbjct 3703656 AGCAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACA 3703715 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||||| |||||||| || | ||| ||||| |||| Sbjct 3703716 ACATTCAGAAGGAGTCGACCCTCCACTTGGTGCTGAG 3703752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398819475420688