Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq6 125 6e-24 seq8 122 7e-23 >seq3 Length=113259003 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| | ||||||||||| || || || || || || ||||| || || ||| Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | || ||||||||| | |||| || ||||| || || || Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | ||| ||| | || | ||||| || || || Sbjct 21885838 ATGCCCTCCTTGTCCTG-AATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 21885896 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || ||||| |||||||| | ||| || ||||| |||||||| Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || || ||||||||||||||||| | || || Sbjct 21885273 ACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAATCCGCCAACGTTCGCCC 21885332 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||||||| | || | || ||||| || || || || ||||| || Sbjct 21885333 ATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTT 21885392 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||| ||| | || | ||||| || || ||||| | ||| || Sbjct 21885393 GTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCACTTCCAAAGTGAT 21885452 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| ||| |||||||| |||||||| Sbjct 21885453 GGTCTTGCCGGTTAGGGTCTTAACAAAAATCTGCAT 21885488 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| | ||||||||||| || || || || || || |||||||| || || Sbjct 21885946 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCG 21886005 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || |||||| | |||| || ||||| || || || Sbjct 21886006 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 21886065 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||| ||| | || | || || || || || Sbjct 21886066 ATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCGGAGCTCTCAACC 21886125 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || ||||| | ||| || || || |||||||| Sbjct 21886126 TCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 21886172 >seq6 Length=78779235 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || || | ||| || || || || ||||| ||||| ||||||||| Sbjct 3703080 CCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCCGCA 3703021 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||||||||| | || | | |||||| || || || Sbjct 3703020 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGAGGG 3702961 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| ||| ||| | || | |||||||| ||| || Sbjct 3702960 ATCCCTTCCTTGTCCTGGATCTTTGCTTTAACATTGTCGATGGTGTCAGAGGATTCAACC 3702901 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| |||| ||||| ||||| |||||||| Sbjct 3702900 TCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCACAAAGATCTGCAT 3702854 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || | || || | |||||| |||||||| || || || || ||||| || Sbjct 3703537 TCCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGC 3703478 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || || ||||||||||| ||||| | || | |||||||| ||||| || Sbjct 3703477 CAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGG 3703418 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| |||||||| | || |||||| | || | ||| || || || || Sbjct 3703417 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCGAC 3703358 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || |||| ||| || ||||| || ||||| Sbjct 3703357 CTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || | || || | ||| || || || || || ||||||||||| || || Sbjct 3703308 CCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCGGCC 3703249 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| | ||||| |||||||| ||||| ||| Sbjct 3703248 AAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGA 3703189 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || |||||| | || | ||| || || || || Sbjct 3703188 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCGACC 3703129 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| ||||| ||||| | ||| || ||||| |||||||| Sbjct 3703128 TCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||||||| || || || || || || |||||||| ||||| || | || || ||| Sbjct 3703750 CAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCGGCCATC 3703691 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 ||||||||||| || ||| | || | || ||||| || || || || ||||| ||||| Sbjct 3703690 CTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3703631 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||| | || ||||| | || | |||||||| || || || | || || || Sbjct 3703630 TTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGT 3703571 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || | |||||| || || ||||||||| Sbjct 3703570 CTTGCCGGTCAGGGTTTTGACGAAAATCTGCATT 3703537 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || || || || || ||||| || ||||| |||| || | Sbjct 3703981 ACGAAGCACAAGGTGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCC 3703922 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || || | ||||| || ||||||||||||||||| ||||| || Sbjct 3703921 ATCTTCAAGCTGCTTCCCTGCGAAGATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTT 3703862 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || |||| || ||||| | || | |||||||| || || || | || || Sbjct 3703861 ATCCTGTATCTTCGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGAT 3703802 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || |||||||||||||| Sbjct 3703801 CGTCTTCCCCGTCAAGGTCTTGACAAATATCTGCAT 3703766 >seq8 Length=131339754 Score = 122 bits (134), Expect = 7e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || ||||| ||||| ||||| || | |||||| || || || || Sbjct 3136019 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGC 3136078 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | || ||||| || || || |||||||||||||| || |||||| Sbjct 3136079 TTCCCCGCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTG-AATTTT 3136137 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||||| | || | |||||||| || || ||||| || || ||||||||||| Sbjct 3136138 GGCTTTGACATTGTCGATTGTGTCAGAGCTCTCGACCTCAAGGGTGATGGTTTTGCCAGT 3136197 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || |||||||| Sbjct 3136198 CAGTGTCTTAACGAAGATCTGCAT 3136221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||||| || || || ||||| ||||| ||||| |||| ||| || || Sbjct 3135782 AGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCC 3135841 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || ||||| | || | || ||||||||||| || || ||||| || || Sbjct 3135842 TCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCC 3135901 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| || |||||| | || | || || || || || || | || || ||| Sbjct 3135902 TGTATCTTGGCCTTGACATTGTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTT 3135961 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| ||||| || || ||||| Sbjct 3135962 TTTCCTGTCAGGGTCTTAACGAAAATTTGCAT 3135993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385163838222672