Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6 150 4e-31 seq3 143 5e-29 seq8 134 3e-26 seq5 107 4e-18 seq7 84.2 4e-11 >seq6 Length=78779235 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| |||||||| || ||||| ||||| ||||||| ||| | || || Sbjct 3703981 ACGAAGCACAAGGTGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCC 3703922 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || ||||| | || || ||||| || || || || ||||| Sbjct 3703921 ATCTTCAAGCTGCTTCCCTGCGAAGATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTT 3703862 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||| || ||||| || || || || || ||||| ||| || | || || ||||| || | Sbjct 3703861 ATCCTGTATCTTCGCCTTGACGTTGTCGATCGTGTCAG-AGCTCTCCACCTCCAAGGTGA 3703803 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||| ||||| |||||||||||||| Sbjct 3703802 TCGTCTTCCCCGTCAAGGTCTTGACAAATATCTGCAT 3703766 Score = 145 bits (160), Expect = 1e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| ||||| ||||| ||||||| ||| | | ||||| || |||||| Sbjct 3703512 TGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTGT 3703453 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||| ||||| || ||||| || || ||||| || || ||||| ||||| ||||| Sbjct 3703452 TTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTG 3703393 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| ||||| ||||| || | || || |||| ||| || || || || || Sbjct 3703392 GCCTTGACATTATCAATAGTATC-GGAGCTCTCGACCTCCAGAGTGATGGTTTTTCCGGT 3703334 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| || ||||| Sbjct 3703333 TAGGGTCTTGACAAAAATTTGCAT 3703310 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || | || ||| | ||||| || || || ||||| || ||||| || | Sbjct 3703308 CCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCGGCC 3703249 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || || || |||||||||||||| | ||||| || || ||||| Sbjct 3703248 AAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGA 3703189 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| ||||| ||||| || || ||||| ||||| ||||| || | || || Sbjct 3703188 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATC-GGAGCTCTCGAC 3703130 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| || || || |||| ||||| ||||| |||||||| Sbjct 3703129 CTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | || || ||||| || || || || || ||||| | Sbjct 3703080 CCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCCGCA 3703021 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || ||||| ||||| ||||| || | ||| || || ||||| Sbjct 3703020 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGAGGG 3702961 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||||||||| ||||| || || || ||| | ||| || Sbjct 3702960 ATCCCTTCCTTGTCCTGGATCTTTGCTTTAACATTGTCGATGGTGTCAGAGGATTCAACC 3702901 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | || || ||||| |||||||| Sbjct 3702900 TCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCACAAAGATCTGCAT 3702854 >seq3 Length=113259003 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | || || || || || ||||| || ||||| || ||||| |||| Sbjct 21885946 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCG 21886005 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || || || || || |||||||||||||| || || || || ||||| || Sbjct 21886006 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 21886065 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||| ||||| || || ||||| ||||||||||| ||||| ||||| || | || || Sbjct 21886066 ATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATC-GGAGCTCTCAAC 21886124 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| |||||||| || || | ||||| || || |||||||| Sbjct 21886125 CTCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 21886172 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || |||||||| | Sbjct 21885260 TACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAATCCG 21885319 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| || || || || || || ||||||||||| || || || || ||||| | Sbjct 21885320 CCAACGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGG 21885379 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | ||||| ||||| || || ||||||||||| ||||| || || || || || | || Sbjct 21885380 GGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTC-GGAGCTCTCC 21885438 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || |||||||| || | ||||| ||||| |||||||| Sbjct 21885439 ACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTAACAAAAATCTGCAT 21885488 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | ||| || | ||| || || || || ||||| || ||||| |||| Sbjct 21885490 CCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCG 21885549 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || ||||| || | || || || ||||| || Sbjct 21885550 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 21885609 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||| ||||| || || ||||||||||| ||||| || || || || || | || || Sbjct 21885610 ATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTC-GGAGCTCTCCAC 21885668 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || |||||||| || | ||||| ||||| |||||||| Sbjct 21885669 TTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || || || ||||| ||||||| || | | || Sbjct 21886185 ACGGAGGACGAGGTGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCC 21886244 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || ||||| || |||||||| |||||||| || || || || || || ||||| Sbjct 21886245 GTCCTCAAGCTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTT 21886304 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || ||||| ||||| ||||| || ||| | || || || | ||| || Sbjct 21886305 GTCCTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGAT 21886364 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | || || ||||| |||||||| Sbjct 21886365 GGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 21886400 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | || || || || || || || || ||||| || || || |||| Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | || || |||||||| || || || || || ||||| || Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || |||||||| ||||||||||| || || || || | || | || || Sbjct 21885838 ATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTC-TGAGCTCTCCAC 21885896 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || |||||||| || | ||||| ||||| |||||||| Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 >seq8 Length=131339754 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || ||||| | ||| | || || Sbjct 3135323 CGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCTCCCA 3135382 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || || || || || ||||| || ||||||||| Sbjct 3135383 TCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTA 3135442 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || ||||| || | || || |||||||| || Sbjct 3135443 TCCTGGATCTTGGCCTTCACATTGTCGATGGTATC-CGAGCTCTCCACCTCCAAAGTGAT 3135501 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||||| | ||||| ||||| |||||||| Sbjct 3135502 CGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 3135537 Score = 100 bits (110), Expect = 6e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || || | |||| | | || || || || || Sbjct 3135563 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCTAGAGTGCGGCCATCCTCGAGCTGC 3135622 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||| || || || || || || || ||||||||||| || || ||||| Sbjct 3135623 TTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTG 3135682 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| ||||| ||||| || | || || || | ||| || ||||| || || Sbjct 3135683 GCCTTAACATTGTCAATGGTATC-CGAGCTCTCCACCTCAAGAGTGATGGTCTTCCCCGT 3135741 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 3135742 AAGAGTCTTCACGAAAATCTGCAT 3135765 >seq5 Length=131469567 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || ||||| || ||||| || ||||||||||| || ||||||| Sbjct 77212194 CCTCCTCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAGCC 77212135 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || ||||| | ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 77212134 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGATCAGGAGGT 77212075 Query 82704 ATTCCTTCCTTATCTTG 82720 || || || ||||| || Sbjct 77212074 ATACCCTCTTTATCCTG 77212058 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || || || ||||| || || ||||||| || | | ||| ||| Sbjct 128086085 AGAACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCT 128086026 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||||||||||||||| || | || || ||||| |||||||| || |||||||| Sbjct 128086025 TCCAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCAGGAGGTATCCCCTCCTTATCC 128085966 Query 82719 TG 82720 || Sbjct 128085965 TG 128085964 >seq7 Length=151357931 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 82603 CTAAG-TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || || |||||||| ||| | || | || || | || | | ||||| || Sbjct 149802530 CTAAGGTGGAGGGTAGATTCGTTCCGGATGCTGTAGTCTGCGAGGGTGCGGCCGTCCTCC 149802589 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||| || || |||| || || || || || ||||| || || Sbjct 149802590 AGCTGCTTCCCAGCAAAGATCAGCCTCTGTTTGTCAGGGGGGATGCCCTCCTTGTCCTGG 149802649 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTT 82780 ||||| || || || || ||| || || || | || | |||| ||| || ||||| Sbjct 149802650 ATCTTGGCCTTCACGTTGTCAGCGGTGTC-CGAGCTCTCGGCCTCCAGAGTGATGGTCTT 149802708 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || | ||||| || || |||||||| Sbjct 149802709 GCCAGTGAGGGTCTTGACGAAAATCTGCAT 149802738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981678860637488