Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq186 86.0 1e-11 seq8 84.2 5e-11 seq5 84.2 5e-11 seq3 84.2 5e-11 >seq186 Length=243035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCA-TTAAAGGT 304993 ||||||| | || | ||||| ||||| | ||| ||| | ||| | |||||| Sbjct 219888 TGCAGGCTACACAGCGGTCTGGACGACCTATCAAGTCTAT-ATGCAGTAGACTTAAAGCA 219830 Query 304994 AAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGT 305053 ||||| ||||| ||| |||| || | |||||||| |||||||||||| ||| ||| Sbjct 219829 AAAGAAGGTCGGATTAGAGGGAACTTGATGGGAAAGCGTGTTGATTTTTCAGCACGAACA 219770 Query 305054 GTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTG 305111 || ||||| |||||| | ||||| | || ||||| | || || || ||| | |||| Sbjct 219769 GTTATCACCCCTGATCCAACAATTAATATTGATGAACTGGGTGTGCC--TTGGAGCATTG 219712 Query 305112 CTTTAAAACTAACATTTCCAGA 305133 | ||||| || || | ||||| Sbjct 219711 CCTTAAATCTGACGTACCCAGA 219690 >seq8 Length=131339754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| ||| |||||| | || || || || |||| | | ||||||||||||| ||| Sbjct 130565293 ATTTGAAAGGAGCACATCAAGGTTTCATCAACACTCATCATAGCACCAGCATTATCAAAT 130565234 Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323 ||| | || ||||| |||||||| |||||||| |||| || | || ||| || || Sbjct 130565233 TCAC-CACAGTAATTAGGTGCTGAGAATACAGTGACTAGTTGTCTATCTGCAAAGAACTC 130565175 Query 167324 ATAACCATCTTCAACAAC 167341 ||||||||| || ||||| Sbjct 130565174 ATAACCATCCTCCACAAC 130565157 >seq5 Length=131469567 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269 |||||||||| | || || || | |||| | | ||||||||||||| |||||| Sbjct 5672931 AAAAGAGCACATTAAGGTTTCATCGACACTCATCATAGCACCAGCATTATCAAATTCA-C 5672989 Query 167270 CGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT-TGAAAAATAATTCATAA 167327 |||| |||||||| ||||| |||| ||| || | || | || || |||| |||||||| Sbjct 5672990 CGCAGTAATTTGGGGCTGAGAATATAGTGACAAGTTGTCTATCTGCAAAA-AATTCATAG 5673048 Query 167328 CCATCTTCAACAAC 167341 |||||||| ||||| Sbjct 5673049 CCATCTTCCACAAC 5673062 >seq3 Length=113259003 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/169 (72%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGT----GTAAT 72224 || || ||||| ||||| ||||| || |||||| || ||| | ||| ||||| Sbjct 8296876 ACCTTCCCAAATACAACATGTTTTCCATCTAAATGAGG----GGTTCGAGTAGTAGTAAT 8296931 Query 72225 GAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACC-TGCTT 72283 |||||| || || |||||| |||||||| || |||||||| || | || || | ||| Sbjct 8296932 GAAGAACTGAGACCCATTTGAGTCAGGACCAGAATTAGCCATCGACAGCATTCCTTTCTT 8296991 Query 72284 CTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATAT 72332 || ||| || | | ||||||||||| ||||| || ||||||||| Sbjct 8296992 CT-CATGTTTAATTTCAAAATTCTCATCCTCAAACTTTGATCCATATAT 8297039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186633490388112