Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq186 86.0 1e-11
seq8 84.2 5e-11
seq5 84.2 5e-11
seq3 84.2 5e-11
>seq186
Length=243035
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/202 (71%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCA-TTAAAGGT 304993
||||||| | || | ||||| ||||| | ||| ||| | ||| | ||||||
Sbjct 219888 TGCAGGCTACACAGCGGTCTGGACGACCTATCAAGTCTAT-ATGCAGTAGACTTAAAGCA 219830
Query 304994 AAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGT 305053
||||| ||||| ||| |||| || | |||||||| |||||||||||| ||| |||
Sbjct 219829 AAAGAAGGTCGGATTAGAGGGAACTTGATGGGAAAGCGTGTTGATTTTTCAGCACGAACA 219770
Query 305054 GTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTG 305111
|| ||||| |||||| | ||||| | || ||||| | || || || ||| | ||||
Sbjct 219769 GTTATCACCCCTGATCCAACAATTAATATTGATGAACTGGGTGTGCC--TTGGAGCATTG 219712
Query 305112 CTTTAAAACTAACATTTCCAGA 305133
| ||||| || || | |||||
Sbjct 219711 CCTTAAATCTGACGTACCCAGA 219690
>seq8
Length=131339754
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264
|||| ||| |||||| | || || || || |||| | | ||||||||||||| |||
Sbjct 130565293 ATTTGAAAGGAGCACATCAAGGTTTCATCAACACTCATCATAGCACCAGCATTATCAAAT 130565234
Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323
||| | || ||||| |||||||| |||||||| |||| || | || ||| || ||
Sbjct 130565233 TCAC-CACAGTAATTAGGTGCTGAGAATACAGTGACTAGTTGTCTATCTGCAAAGAACTC 130565175
Query 167324 ATAACCATCTTCAACAAC 167341
||||||||| || |||||
Sbjct 130565174 ATAACCATCCTCCACAAC 130565157
>seq5
Length=131469567
Score = 84.2 bits (92), Expect = 5e-11
Identities = 102/134 (76%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269
|||||||||| | || || || | |||| | | ||||||||||||| ||||||
Sbjct 5672931 AAAAGAGCACATTAAGGTTTCATCGACACTCATCATAGCACCAGCATTATCAAATTCA-C 5672989
Query 167270 CGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT-TGAAAAATAATTCATAA 167327
|||| |||||||| ||||| |||| ||| || | || | || || |||| ||||||||
Sbjct 5672990 CGCAGTAATTTGGGGCTGAGAATATAGTGACAAGTTGTCTATCTGCAAAA-AATTCATAG 5673048
Query 167328 CCATCTTCAACAAC 167341
|||||||| |||||
Sbjct 5673049 CCATCTTCCACAAC 5673062
>seq3
Length=113259003
Score = 84.2 bits (92), Expect = 5e-11
Identities = 122/169 (72%), Gaps = 10/169 (6%)
Strand=Plus/Plus
Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGT----GTAAT 72224
|| || ||||| ||||| ||||| || |||||| || ||| | ||| |||||
Sbjct 8296876 ACCTTCCCAAATACAACATGTTTTCCATCTAAATGAGG----GGTTCGAGTAGTAGTAAT 8296931
Query 72225 GAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACC-TGCTT 72283
|||||| || || |||||| |||||||| || |||||||| || | || || | |||
Sbjct 8296932 GAAGAACTGAGACCCATTTGAGTCAGGACCAGAATTAGCCATCGACAGCATTCCTTTCTT 8296991
Query 72284 CTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATAT 72332
|| ||| || | | ||||||||||| ||||| || |||||||||
Sbjct 8296992 CT-CATGTTTAATTTCAAAATTCTCATCCTCAAACTTTGATCCATATAT 8297039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186633490388112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |