Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq8 87.8 1e-12 seq3 82.4 5e-11 >seq6 Length=78779235 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | ||| || || ||| ||||| ||||||||||| | Sbjct 3703080 CCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCCGCA 3703021 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || || || || | ||| ||||| || | || Sbjct 3703020 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGAGGG 3702961 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || || ||||| ||| | |||||| ||||| || Sbjct 3702960 ATCCCTTCCTTGTCCTGGATCTT-TGCTTTAACATTGTCGATGGTGTCAGAGGATTCAAC 3702902 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || |||| ||||| |||||||||||||| Sbjct 3702901 CTCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCACAAAGATCTGCAT 3702854 >seq8 Length=131339754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| ||||||||||| | || ||||| |||| || | || Sbjct 3136019 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGC 3136078 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||| | | |||||| ||| | || | ||| |||||||| |||||| Sbjct 3136079 TTCCCCGCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTT- 3136137 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 | || |||| ||| | ||||| ||| || || |||| ||||| ||||| || Sbjct 3136138 GGCTTTGACATTGTCGATTGTGTCAGAGCT---CTCGACCTCAAGGGTGATGGTTTTGCC 3136194 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || ||||||||||| Sbjct 3136195 AGTCAGTGTCTTAACGAAGATCTGCAT 3136221 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || ||| | ||| || ||| ||| ||||| |||||||| |||| ||| || || | || Sbjct 3136237 TAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATC 3136296 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | || || ||||||||||| | | |||||| ||| | || | || || ||||| Sbjct 3136297 CTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 3136356 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGA 33712 ||||| | | |||| ||| | ||||| ||| || || |||| ||||| Sbjct 3136357 CTGGATTTT-GGCCTTGACATTGTCGATTGTGTCAGAGCT---CTCAACCTCAAGCGTGA 3136412 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || || || || ||||| |||||||| Sbjct 3136413 TGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 >seq3 Length=113259003 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||| || || | ||| ||||| | || || | || Sbjct 21885514 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGC 21885573 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||||||||| | |||||| ||| | || | || || ||||| || || Sbjct 21885574 TTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTT- 21885632 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || |||| ||| | ||||||| ||||| || | ||||| || || || || Sbjct 21885633 TGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCACTTCCAAAGTGATGGTCTTGCCGGT 21885692 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || ||||| |||||||| Sbjct 21885693 TAGGGTCTTGACAAAAATCTGCAT 21885716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328656760304640