Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6 138 3e-27 seq8 132 1e-25 seq3 118 3e-21 seq5 107 5e-18 >seq6 Length=78779235 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||| || | || || || |||||||| ||||| ||||| || |||||| Sbjct 3703769 CAGATATTTGTCAAGACCTTGACGGGGAAGACGATCACCTTGGAGGTGGAGAGCTCTGAC 3703828 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 3703829 ACGATCGACAACGTCAAGGCGAAGATACAGGATAAGGAGGGGATTCCGCCGGATCAGCAG 3703888 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| || |||||| | |||||||| |||||| | || |||||||| | Sbjct 3703889 AGGTTGATCTTCGCAGGGAAGCAGCTTGAAGATGGGAGGACTCTTGCTGATTACAATATT 3703948 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||||| |||||||| Sbjct 3703949 CAGAAGGAGTCTACTCTCCACCTTGT 3703974 Score = 120 bits (132), Expect = 7e-22 Identities = 148/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || |||||||| |||||| |||| || || || || || || | Sbjct 3703318 TTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTCCGATACTAT 3703377 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| ||||| ||||| || || || ||| |||||| ||||| || Sbjct 3703378 TGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAGCAAAGGCT 3703437 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||||||| ||||| || | || || || ||||| |||| |||||||| ||||||| Sbjct 3703438 TATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAATATCCAGAA 3703497 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 || || |||||||| ||||| Sbjct 3703498 GGAATCCACTCTTCATCTTGT 3703518 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || ||||| || || ||||| || || || || || Sbjct 3703085 CAGATCTTTGTCAAGACCCTGACTGGGAAAACCATAACGTTGGAGGTCGAGAGCTCCGAT 3703144 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || ||| |||||| ||| Sbjct 3703145 ACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAGCAA 3703204 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || ||||||||| | || ||||| | ||||||||||| || ||| | Sbjct 3703205 AGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTTTGGCCGACTATAACATT 3703264 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || || ||||||||||| || || Sbjct 3703265 CAGAAGGAGTCAACCCTGCATCTTGTTTTGAGGCTGCG 3703302 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||||||||| ||||| | ||| || ||||| | |||||| |||||||| Sbjct 3703974 ACAAGGTGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATCTTCA 3703915 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| | || || ||| Sbjct 3703914 AGCTGCTTCCCTGCGAAGATCAACCTCTGCTGA 3703882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || ||||||||||| || || || ||||| ||||| | |||||||| |||||||| Sbjct 3703302 CGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCGGCCAAAGTA 3703243 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || ||||||||||| || ||||| | || ||| || Sbjct 3703242 CGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTG 3703199 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| |||||||| || || ||||||| ||| || ||||||| ||||| || || || Sbjct 3703518 ACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCG 3703459 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || || ||||| ||||||||||||| ||| || Sbjct 3703458 AGTTGTTTTCCAGCGAAGATAAGCCTTTGCTG 3703427 >seq8 Length=131339754 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || |||||||||||||| ||||| || || || Sbjct 3135534 CAGATTTTTGTGAAGACCCTTACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCGGAT 3135475 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || |||||| || Sbjct 3135474 ACCATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCGGACCAGCAG 3135415 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| | || ||||| |||||| | || ||||||||| || Sbjct 3135414 AGGCTCATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAACATC 3135355 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 3135354 CAGAAGGAGTCCACCCTTCACCTTGT 3135329 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| || || ||||| ||||| || || || ||| |||| Sbjct 3135978 AAGACCCTGACAGGAAAAACCATTACCTTGGAGGTGGAGAGCTCGGATACAATCGACAAT 3135919 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||| || || || |||||| Sbjct 3135918 GTCAAGGCCAAGATACAGGATAAGGAGGGCATCCCCCCGGATCAGCAGAGGCTCATCTTC 3135859 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || | || ||||||||| |||| || ||||| Sbjct 3135858 GCTGGGAAGCAGCTTGAGGACGGCCGAACCCTTGCAGATTACAACATCCAAAAGGAGTCG 3135799 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||||||||| | || ||||| Sbjct 3135798 ACCCTTCACCTTGTGCTCAGGCTTCG 3135773 >seq3 Length=113259003 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||||||||| || || ||| Sbjct 21885485 CAGATTTTTGTTAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCCGAC 21885426 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| |||||| || || || || ||||| || ||| || Sbjct 21885425 ACCATCGACAATGTGAAAGC-AAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCA 21885367 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || |||||||| || || |||||| | || ||||| | || ||||| ||||| ||| | Sbjct 21885366 GAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGAACGTTGGCGGATTATAACAT 21885307 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 21885306 TCAGAAGGAGTCCACCCTCCACCTTGT 21885280 Score = 113 bits (124), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||||||||||||||| || || ||| Sbjct 21885713 CAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCCGAC 21885654 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || |||||||| ||| || || || || ||||| || ||| || Sbjct 21885653 ACCATCGACAATGTGAAAGCAAA-GATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCA 21885595 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || || ||||| |||||| | || ||||| | || | || || || ||| | Sbjct 21885594 GAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTATAACAT 21885535 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||| ||||| || ||||||||||| |||| || Sbjct 21885534 CCAGAAGGAGTCCACCCTTCACCTTGTGCTGAGGCT 21885499 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| |||||||| || || |||||| | || || || ||||||||| Sbjct 21886397 CAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTCTGAC 21886338 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || || || || || || || || ||| || Sbjct 21886337 ACCATTGATAATGTCAAAGCCAAA-ATCCAGGACAAGGAGGGGATCCCCCCTGACCAGCA 21886279 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| ||||| ||||| || ||| | || || || | || | || |||||||| | Sbjct 21886278 AAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTACAATAT 21886219 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| || ||||| || || ||||| || Sbjct 21886218 CCAAAAGGAGTCCACACTCCACCTCGT 21886192 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | |||||||| || || ||| Sbjct 21885941 CAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTCAGAC 21885882 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||||| || || || || || || ||| || Sbjct 21885881 ACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 21885822 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || || ||||||||||| ||||| | || | || || |||||| || Sbjct 21885821 AGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAACATC 21885762 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| || || || Sbjct 21885761 CAGAAGGAGTCGACCCTCCA 21885742 >seq5 Length=131469567 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || || || || |||||||| ||||||||||||||||| |||| ||||||||| Sbjct 77212088 CAGAGGCTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTGGCTGATTACAAC 77212147 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||||||||| |||||||| || |||||||| ||| || Sbjct 77212148 ATACAGAAAGAGTCAACTCTTCATCTAGTTTTGAGGCTTAGA 77212189 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||| |||||||| || |||||||| ||||||||||| | || || ||||||| || Sbjct 77212189 TCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAGCCAGGGT 77212130 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||| |||||||| || || || |||| || ||| Sbjct 77212129 CCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGA 77212084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181642244604432