Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 1e-23
seq10 109 8e-19
seq3174 91.5 2e-13
seq831 91.5 2e-13
>seq4
Length=146560859
Score = 125 bits (138), Expect = 1e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||| | || | ||||||| |||| | || || | ||| || | ||||||
Sbjct 9259125 TCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACC 9259066
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||| | || ||||||||| ||||||||| || |||| |||||||| || |||
Sbjct 9259065 ATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGA 9259006
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 9259005 AACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATAT 9258946
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| || ||||||||| |||| || ||| || |||||
Sbjct 9258945 GCCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904
Score = 114 bits (126), Expect = 2e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || ||||||||||| |||||||| || || || ||||| | || | ||||
Sbjct 9258798 AGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 9258739
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||||| | ||| || || ||||| || |||||||| | || || | |||||
Sbjct 9258738 GTATGTTTTGACAGCAGAATCAATATCTTCCTTGTGAATTCCAACAGCAACTCTCATCAG 9258679
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || ||||||| |||||| || | | | ||| || || || ||| | || ||
Sbjct 9258678 CATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGATCTCTCAAG 9258619
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|||||| || ||||| |||| || ||||||||| || ||||| ||
Sbjct 9258618 AGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||| | ||||||| ||| || | | | || || || ||||| |||| |||||||
Sbjct 9260037 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTCGCCCCAGCAATCAGCCAATCC 9259978
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608
||| |||||| || || | |||||||||| | ||| || | |||| | ||||||
Sbjct 9259977 CGGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAA 9259918
Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659
|| ||||||||||| || || ||||||||| | | ||| | ||||||
Sbjct 9259917 GAGGTCGGGAATCCAGAGGGCATAAAAGAGATCGCGTGCTCTGTGTTCTTC 9259867
>seq10
Length=73452336
Score = 109 bits (120), Expect = 8e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| || | ||| || | |||||||||||| | || ||||||||| ||||||||| ||
Sbjct 24507406 ACCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCC 24507465
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
|||| |||||||| || ||| | ||| |||||||| || ||| || | ||||
Sbjct 24507466 ATTGCACGAATATTGTGAACAGAAACACCAATTCCTCCAGCAGATTTGCTTATAACAGCA 24507525
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|| || | ||||||||||| ||||| || ||||||||| |||| || ||| ||
Sbjct 24507526 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 24507585
Query 69967 CAGCT 69971
|||||
Sbjct 24507586 CAGCT 24507590
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| || | ||| || | |||||||||||| | | ||||||||| ||||||||| ||
Sbjct 1168347 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 1168288
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
|||| | | |||| || ||| | ||| ||||||| || ||| || | ||||
Sbjct 1168287 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 1168228
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|| || | ||||||||||| ||||| || ||||||||| |||| || ||| ||
Sbjct 1168227 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 1168168
Query 69967 CAGCT 69971
|||||
Sbjct 1168167 CAGCT 1168163
>seq3174
Length=2385
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| || | ||| || | |||||||||||| | | ||||||||| ||||||||| ||
Sbjct 1038 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 1097
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
|||| | | |||| || ||| | ||| ||||||| || ||| || | ||||
Sbjct 1098 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 1157
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|| || | ||||||||||| ||||| || ||||||||| |||| || ||| ||
Sbjct 1158 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 1217
Query 69967 CAGCT 69971
|||||
Sbjct 1218 CAGCT 1222
>seq831
Length=51122
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| || | ||| || | |||||||||||| | | ||||||||| ||||||||| ||
Sbjct 18737 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 18796
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
|||| | | |||| || ||| | ||| ||||||| || ||| || | ||||
Sbjct 18797 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 18856
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|| || | ||||||||||| ||||| || ||||||||| |||| || ||| ||
Sbjct 18857 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 18916
Query 69967 CAGCT 69971
|||||
Sbjct 18917 CAGCT 18921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686807549642880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |