Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq10 109 8e-19 seq3174 91.5 2e-13 seq831 91.5 2e-13 >seq4 Length=146560859 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||||| |||| | || || | ||| || | |||||| Sbjct 9259125 TCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACC 9259066 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | || ||||||||| ||||||||| || |||| |||||||| || ||| Sbjct 9259065 ATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGA 9259006 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 9259005 AACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATAT 9258946 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| |||| || ||| || ||||| Sbjct 9258945 GCCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||||||||| |||||||| || || || ||||| | || | |||| Sbjct 9258798 AGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 9258739 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| | ||| || || ||||| || |||||||| | || || | ||||| Sbjct 9258738 GTATGTTTTGACAGCAGAATCAATATCTTCCTTGTGAATTCCAACAGCAACTCTCATCAG 9258679 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||||| |||||| || | | | ||| || || || ||| | || || Sbjct 9258678 CATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGATCTCTCAAG 9258619 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| || ||||| |||| || ||||||||| || ||||| || Sbjct 9258618 AGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| | ||||||| ||| || | | | || || || ||||| |||| ||||||| Sbjct 9260037 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTCGCCCCAGCAATCAGCCAATCC 9259978 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| |||||| || || | |||||||||| | ||| || | |||| | |||||| Sbjct 9259977 CGGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAA 9259918 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||||||||| || || ||||||||| | | ||| | |||||| Sbjct 9259917 GAGGTCGGGAATCCAGAGGGCATAAAAGAGATCGCGTGCTCTGTGTTCTTC 9259867 >seq10 Length=73452336 Score = 109 bits (120), Expect = 8e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || | ||| || | |||||||||||| | || ||||||||| ||||||||| || Sbjct 24507406 ACCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCC 24507465 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| |||||||| || ||| | ||| |||||||| || ||| || | |||| Sbjct 24507466 ATTGCACGAATATTGTGAACAGAAACACCAATTCCTCCAGCAGATTTGCTTATAACAGCA 24507525 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || || | ||||||||||| ||||| || ||||||||| |||| || ||| || Sbjct 24507526 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 24507585 Query 69967 CAGCT 69971 ||||| Sbjct 24507586 CAGCT 24507590 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || | ||| || | |||||||||||| | | ||||||||| ||||||||| || Sbjct 1168347 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 1168288 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| | | |||| || ||| | ||| ||||||| || ||| || | |||| Sbjct 1168287 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 1168228 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || || | ||||||||||| ||||| || ||||||||| |||| || ||| || Sbjct 1168227 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 1168168 Query 69967 CAGCT 69971 ||||| Sbjct 1168167 CAGCT 1168163 >seq3174 Length=2385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || | ||| || | |||||||||||| | | ||||||||| ||||||||| || Sbjct 1038 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 1097 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| | | |||| || ||| | ||| ||||||| || ||| || | |||| Sbjct 1098 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 1157 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || || | ||||||||||| ||||| || ||||||||| |||| || ||| || Sbjct 1158 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 1217 Query 69967 CAGCT 69971 ||||| Sbjct 1218 CAGCT 1222 >seq831 Length=51122 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || | ||| || | |||||||||||| | | ||||||||| ||||||||| || Sbjct 18737 ACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATAACTGCCC 18796 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| | | |||| || ||| | ||| ||||||| || ||| || | |||| Sbjct 18797 ATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTATAACAGCA 18856 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || || | ||||||||||| ||||| || ||||||||| |||| || ||| || Sbjct 18857 CACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAATAAGGAAG 18916 Query 69967 CAGCT 69971 ||||| Sbjct 18917 CAGCT 18921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686807549642880