Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 >seq2 Length=84732013 Score = 116 bits (128), Expect = 3e-21 Identities = 239/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || || || |||||| ||||| | Sbjct 24868337 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCTC 24868396 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || | |||||||| || | || ||| || | ||| | || || || || | Sbjct 24868397 GAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATC 24868456 Query 44063 CCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGATTC 44118 ||| ||| | | || || || ||||| || || ||||| || ||| || || Sbjct 24868457 CCTTGCGTCGCCA-AGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCA---GAGTC 24868512 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGT 44177 ||| | || || | |||| ||||| || ||||| |||||||| || || | | | Sbjct 24868513 TTTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTT 24868572 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| | |||| || ||| | || || || || |||||||| ||||| || |||||||| | Sbjct 24868573 TTGTG-CCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACG 24868631 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || | ||| ||| || |||||| | ||||||||||| ||||||||||| Sbjct 24868632 AGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGCTTGCTTGTT 24868680 Score = 116 bits (128), Expect = 3e-21 Identities = 239/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || || || |||||| ||||| | Sbjct 26603289 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCTC 26603230 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || | |||||||| || | || ||| || | ||| | || || || || | Sbjct 26603229 GAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATC 26603170 Query 44063 CCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGATTC 44118 ||| ||| | | || || || ||||| || || ||||| || ||| || || Sbjct 26603169 CCTTGCGTCGCCA-AGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCA---GAGTC 26603114 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGT 44177 ||| | || || | |||| ||||| || ||||| |||||||| || || | | | Sbjct 26603113 TTTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTT 26603054 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| | |||| || ||| | || || || || |||||||| ||||| || |||||||| | Sbjct 26603053 TTGTG-CCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACG 26602995 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || | ||| ||| || |||||| | ||||||||||| ||||||||||| Sbjct 26602994 AGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGCTTGCTTGTT 26602946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397398879610960