Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 seq3 96.9 4e-15 seq2 82.4 1e-10 >seq8 Length=131339754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| |||||||| | ||||| || || || | || | || || || | || || Sbjct 3127968 ATCTAGGATATCAGCACGATTGGTAGCTGCGACCACAATAACCCCGGTATTTCCTTCGAA 3128027 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||||||||| | | ||||| | || |||||||| || ||||| || Sbjct 3128028 ACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCGCC 3128087 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | |||| | | ||| | || || |||||||||||||||| || ||||| || || Sbjct 3128088 AATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAACAAATACAATGCAAGG 3128147 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 | ||| || || | | || ||||| ||||| ||| ||||| || |||||||| Sbjct 3128148 TGCATTCTCTTTTGCCTTCTTGAAAAGATCACGAACTCTTGAAGCACCAACTCCAACAAA 3128207 Query 11722 CATCTCCACAAA 11733 |||||||||||| Sbjct 3128208 CATCTCCACAAA 3128219 >seq3 Length=113259003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| | || || | ||| | ||| |||||| || || || || || || Sbjct 762579 CGGTCAAACCTCCCTGGTCTAAGCAAGGCTGAATCAAGAATTTCAGGTCGGTTTGTTGCG 762520 Query 11510 GCAATAACCACAATGCCAGTCTC---ATTGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 |||||||| | || || | || | || ||||||||||| ||||| ||||| || Sbjct 762519 GCAATAACAATAACCCCGCTATCCCCACTG---AAGCCATCCATTTCGGTAAGTAACTGG 762463 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGC 11624 || | |||||| ||||| ||||||||| || | | | | |||| | | |||| | | Sbjct 762462 TTTAGTGTTTGCTCTCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCTTC 762405 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| |||||||||||||| ||||| || | ||||||| Sbjct 762404 CCACTGCATCAATCTCATCTATGAAAACTAGACATGGT 762367 >seq2 Length=84732013 Score = 82.4 bits (90), Expect = 1e-10 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||| || || ||||| || || || || ||||| ||| || || ||||| | || Sbjct 24868659 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 24868600 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| || | ||| |||| || || || |||||||||||| || || || || || Sbjct 24868599 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 24868540 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG---CATCAAACCATTTCATT 122847 ||||| || | | | |||||||| ||||| || |||| | ||| |||| Sbjct 24868539 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 24868486 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 122907 ||||| | |||||||| | | || || | || | |||||| | ||| | | || Sbjct 24868485 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 24868426 Query 122908 TTTTCA 122913 |||||| Sbjct 24868425 TTTTCA 24868420 Score = 82.4 bits (90), Expect = 1e-10 Identities = 166/246 (67%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||| || || ||||| || || || || ||||| ||| || || ||||| | || Sbjct 26602967 TGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCG 26603026 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| || | ||| |||| || || || |||||||||||| || || || || || Sbjct 26603027 CGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAA 26603086 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG---CATCAAACCATTTCATT 122847 ||||| || | | | |||||||| ||||| || |||| | ||| |||| Sbjct 26603087 GCAAAAGCGATCAATCTCTCGGCGAA------AGACTCTGAGCCATCGATCCACTTCAGC 26603140 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 122907 ||||| | |||||||| | | || || | || | |||||| | ||| | | || Sbjct 26603141 GCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTC 26603200 Query 122908 TTTTCA 122913 |||||| Sbjct 26603201 TTTTCA 26603206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627939428083200