Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq8 118 1e-21
seq7 87.8 2e-12
>seq8
Length=131339754
Score = 118 bits (130), Expect = 1e-21
Identities = 235/339 (69%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613
||| ||||||||| | ||||| || || |||| |||| || || || ||| || |
Sbjct 3127968 ATCTAGGATATCAGCACGATTGGTAGCTGCGACCACAATAACCCCGGTATTTCCTT--CG 3128025
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|||||||||||||| || ||||| || || | ||| ||||| | ||| |||||| ||
Sbjct 3128026 AAACCATCCATCTCGGTTAAAAGCTGATTGAGAGTCTGTTCTCTTTCGTCATTCCCTCCG 3128085
Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733
| |||| | | ||| | || || |||||||||||||||| || || |||||
Sbjct 3128086 CCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAACAAATACAATGCAA 3128145
Query 9734 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 9790
||| ||| || | | ||| ||| ||||| || || |||| || || || |||
Sbjct 3128146 GGTGCATTCTCTTTTGCCTTCTTGAAA-AGATCACG--AACTCTTGAAGCACCAACTCCA 3128202
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
||||||||||||||||| | | | ||| |||| || || || || || ||||||
Sbjct 3128203 ACAAACATCTCCACAAACTCCGATCCTGAA-ATTGAGAAAAATGGAACGCCAGCTTCACC 3128261
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| || || || || | |||||| || || |||||
Sbjct 3128262 AGCTATTGCCTTTGCAAGCAAAGTCTTTCCAGTTCCTGG 3128300
>seq7
Length=151357931
Score = 87.8 bits (96), Expect = 2e-12
Identities = 241/367 (66%), Gaps = 12/367 (3%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| ||||||||||| ||||| || ||||| ||||| || |||| ||||||||| || |
Sbjct 78779729 AATCCATCCATCTCCGTCAACAGCTGGTTTATAGTCTGCTCCCTCTCATCATTCCCT--C 78779786
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| | | || || | | ||| | || || |||||||||||||| ||||| || || |
Sbjct 78779787 CTCCAAGCCCCGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCGATGAACACAATAC 78779846
Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787
| || || |||||| | || || | ||||| || | ||| ||||||
Sbjct 78779847 AGGGTGCCTTAGATTTCGCCTTC----TCGAATAAATCCCTAACCCTAGAGGCTCCCACA 78779902
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847
|||||||||| || || || | | || | |||| | ||| || || | ||
Sbjct 78779903 CCAACAAACAATTCGACGAATTCGGATGCTGCACATGAAAAGAACGGCACTCCGGCCTCT 78779962
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
|| || | || ||||| | ||| ||||| ||||| || || ||| | | ||| |
Sbjct 78779963 CCGGCCACAGCCCGGGCTAAAAGGGTCTTCCCCGTCCCAGGTGGGCCCACCAAGAGACAA 78780022
Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 9967
||| || ||||| || || || ||| | ||||| | ||| | ||||| ||
Sbjct 78780023 CCTTTGGGGATCTTTGCTCCTAGAGCAGTGTACTTATCAGGATTCTTCAAGAAATCAACC 78780082
Query 9968 ATTTCTT 9974
| |||||
Sbjct 78780083 ACTTCTT 78780089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583174827358080
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |