Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 7e-31
>seq2
Length=84732013
Score = 149 bits (164), Expect = 7e-31
Identities = 307/447 (69%), Gaps = 10/447 (2%)
Strand=Plus/Plus
Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737
|||||||| || ||| ||| ||||| ||||||||||| || || || || ||
Sbjct 24868219 CGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 24868278
Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
|||| || | | | | | |||| ||||| |||||| | ||||||||| || |
Sbjct 24868279 CCTGGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCC 24868336
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | |
Sbjct 24868337 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCT 24868395
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913
||| | ||||||| | || || ||| | || || | ||||| ||||| |
Sbjct 24868396 CGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCAT 24868455
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972
||| || || | || || || ||||| || ||||||| || || || ||
Sbjct 24868456 CCCTTGC-GTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTC-AGAGTCT 24868513
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || | | | || |||||||| ||||| ||||| || |||||||| || ||
Sbjct 24868514 TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTT 24868573
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
||||| ||||||||||| |||||||| || | |||||||| | | || || ||||||
Sbjct 24868574 TGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAG 24868633
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCAT 60119
|| || || || ||||| |||||||||
Sbjct 24868634 CTCATATCTCGAGACGAAGGCCTCCAT 24868660
Score = 149 bits (164), Expect = 7e-31
Identities = 307/447 (69%), Gaps = 10/447 (2%)
Strand=Plus/Minus
Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737
|||||||| || ||| ||| ||||| ||||||||||| || || || || ||
Sbjct 26603407 CGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 26603348
Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
|||| || | | | | | |||| ||||| |||||| | ||||||||| || |
Sbjct 26603347 CCTGGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCC 26603290
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | |
Sbjct 26603289 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCT 26603231
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913
||| | ||||||| | || || ||| | || || | ||||| ||||| |
Sbjct 26603230 CGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCAT 26603171
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972
||| || || | || || || ||||| || ||||||| || || || ||
Sbjct 26603170 CCCTTGC-GTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTC-AGAGTCT 26603113
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || | | | || |||||||| ||||| ||||| || |||||||| || ||
Sbjct 26603112 TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTT 26603053
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
||||| ||||||||||| |||||||| || | |||||||| | | || || ||||||
Sbjct 26603052 TGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAG 26602993
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCAT 60119
|| || || || ||||| |||||||||
Sbjct 26602992 CTCATATCTCGAGACGAAGGCCTCCAT 26602966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548443947444480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |