Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 >seq2 Length=84732013 Score = 149 bits (164), Expect = 7e-31 Identities = 307/447 (69%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 |||||||| || ||| ||| ||||| ||||||||||| || || || || || Sbjct 24868219 CGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 24868278 Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || | | | | | |||| ||||| |||||| | ||||||||| || | Sbjct 24868279 CCTGGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCC 24868336 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | | Sbjct 24868337 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCT 24868395 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 ||| | ||||||| | || || ||| | || || | ||||| ||||| | Sbjct 24868396 CGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCAT 24868455 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972 ||| || || | || || || ||||| || ||||||| || || || || Sbjct 24868456 CCCTTGC-GTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTC-AGAGTCT 24868513 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | | | || |||||||| ||||| ||||| || |||||||| || || Sbjct 24868514 TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTT 24868573 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| ||||||||||| |||||||| || | |||||||| | | || || |||||| Sbjct 24868574 TGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAG 24868633 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCAT 60119 || || || || ||||| ||||||||| Sbjct 24868634 CTCATATCTCGAGACGAAGGCCTCCAT 24868660 Score = 149 bits (164), Expect = 7e-31 Identities = 307/447 (69%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 |||||||| || ||| ||| ||||| ||||||||||| || || || || || Sbjct 26603407 CGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 26603348 Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || | | | | | |||| ||||| |||||| | ||||||||| || | Sbjct 26603347 CCTGGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCC 26603290 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | | Sbjct 26603289 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTTCTCCT 26603231 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 ||| | ||||||| | || || ||| | || || | ||||| ||||| | Sbjct 26603230 CGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCAT 26603171 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972 ||| || || | || || || ||||| || ||||||| || || || || Sbjct 26603170 CCCTTGC-GTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTC-AGAGTCT 26603113 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | | | || |||||||| ||||| ||||| || |||||||| || || Sbjct 26603112 TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTT 26603053 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| ||||||||||| |||||||| || | |||||||| | | || || |||||| Sbjct 26603052 TGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAG 26602993 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCAT 60119 || || || || ||||| ||||||||| Sbjct 26602992 CTCATATCTCGAGACGAAGGCCTCCAT 26602966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548443947444480