Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 seq4 100 3e-16 seq3 93.3 5e-14 seq7 89.7 6e-13 seq5 89.7 6e-13 seq9 86.0 7e-12 >seq2 Length=84732013 Score = 125 bits (138), Expect = 8e-24 Identities = 312/463 (67%), Gaps = 17/463 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||| ||| | || || ||||| | | || ||||| | ||| ||||| Sbjct 24868654 GCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCGCGCTT 24868595 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| || |||||||| ||| || |||||| || |||||||| || ||||| Sbjct 24868594 TTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAA 24868535 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 |||| | | | ||||| | | | | ||||| || | ||||| || || Sbjct 24868534 AGCGATCAATCTCTCGGCGAAAGACTCTGAGCCATCGATCCACTTCAGCGCCCACTCGGC 24868475 Query 74948 TTTTCGTTTGAC--CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || ||| | |||| |||| || ||||| || || || |||| ||| || || Sbjct 24868474 CTTC---TTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTCTTTTCATC 24868418 Query 75005 GGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 || ||||||| | || | || | | ||| |||||| |||| || || || |||| Sbjct 24868417 GGAGTCCTTGATGTAGGAT-TCGAGGAGAAGCGAGTACATCTCGGAGTGGATGTTCTCGA 24868359 Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120 || ||| |||| | ||||||| | || ||||| || | ||| || ||||| ||||| Sbjct 24868358 TGG-CGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGACCTCCTTCATGAAA 24868300 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 | | ||| ||||||| |||||||||||| ||||||||||| || || || || Sbjct 24868299 CGGCC--GGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGT 24868242 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCA 75220 ||| ||||||||||| ||| | || || || |||||| Sbjct 24868241 GGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCA 24868199 Score = 125 bits (138), Expect = 8e-24 Identities = 312/463 (67%), Gaps = 17/463 (4%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||| ||| | || || ||||| | | || ||||| | ||| ||||| Sbjct 26602972 GCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGCATCAATCCGCGCTT 26603031 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| || |||||||| ||| || |||||| || |||||||| || ||||| Sbjct 26603032 TTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAA 26603091 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 |||| | | | ||||| | | | | ||||| || | ||||| || || Sbjct 26603092 AGCGATCAATCTCTCGGCGAAAGACTCTGAGCCATCGATCCACTTCAGCGCCCACTCGGC 26603151 Query 74948 TTTTCGTTTGAC--CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || ||| | |||| |||| || ||||| || || || |||| ||| || || Sbjct 26603152 CTTC---TTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGGCGGCTCTTTTCATC 26603208 Query 75005 GGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 || ||||||| | || | || | | ||| |||||| |||| || || || |||| Sbjct 26603209 GGAGTCCTTGATGTAGGAT-TCGAGGAGAAGCGAGTACATCTCGGAGTGGATGTTCTCGA 26603267 Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120 || ||| |||| | ||||||| | || ||||| || | ||| || ||||| ||||| Sbjct 26603268 TGG-CGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGACCTCCTTCATGAAA 26603326 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 | | ||| ||||||| |||||||||||| ||||||||||| || || || || Sbjct 26603327 CGGCC--GGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGT 26603384 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCA 75220 ||| ||||||||||| ||| | || || || |||||| Sbjct 26603385 GGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCA 26603427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 82426000 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 82426059 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 82426060 TGAGCTACGAAAGC 82426073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 11387191 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11387250 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 11387251 TGAGCTATGAAAGC 11387264 >seq4 Length=146560859 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 69181994 AGAGTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 69181935 Query 79680 CAATTGAGCTACGAAAGCAA 79699 ||| |||||||||||||||| Sbjct 69181934 CAACTGAGCTACGAAAGCAA 69181915 >seq3 Length=113259003 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 68256621 ACTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 68256680 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 68256681 ACTGAGCTACGAAAGC 68256696 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15782792 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15782851 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 15782852 TGAGCTACGAAAGC 15782865 >seq7 Length=151357931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 43577848 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 43577789 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 43577788 TGAGCTACGAAAGC 43577775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 79629 TTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTGAG 79687 |||| |||| | || |||| ||||||||||||||||||||||||||| ||||| |||| Sbjct 131598612 TTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAG 131598671 Query 79688 CTACGAAAGCAA 79699 |||||||||||| Sbjct 131598672 CTACGAAAGCAA 131598683 >seq5 Length=131469567 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2599015 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2599074 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2599075 TGAGCTACGAAAGC 2599088 >seq9 Length=68543460 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4965743 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4965684 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4965683 TGAGCTATGAAAGC 4965670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 61825902 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 61825961 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 61825962 TGAGCTATGAAAGC 61825975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547135340361600