Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq6 136 3e-27
seq3 120 3e-22
seq8 98.7 9e-16
>seq6
Length=78779235
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || ||||||||| | || || || || || ||| | ||
Sbjct 3702854 ATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAATCCTCT 3702913
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| ||| || || ||||| ||||| || || ||||| ||
Sbjct 3702914 GACACCATCGACAATGTTAAAGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 3702973
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| |||||||| | || || | |||| || | |||||||||
Sbjct 3702974 CAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGATTACAAC 3703033
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | ||| | || | ||| | ||||||||||
Sbjct 3703034 ATCCAAAAGGAGTCTACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCAT 3703083
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||||||||||| | || || | || || || ||
Sbjct 3703538 ATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTCT 3703597
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||| || ||||| || || || ||
Sbjct 3703598 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 3703657
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | ||||| |||||| | || || | ||| | | |||||||||
Sbjct 3703658 CAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACAAC 3703717
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||||| |||||||||||| | || |||||
Sbjct 3703718 ATTCAGAAGGAGTCGACCCTCCACTTGGT 3703746
>seq3
Length=113259003
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || || || |||||| |||| || ||||||||||| ||
Sbjct 21885945 CATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTC 21885886
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | || ||| || ||||| ||||| || ||||| || || || ||
Sbjct 21885885 AGACACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCA 21885826
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || ||||| || ||||| || | ||| || | || |||||
Sbjct 21885825 GCAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAA 21885766
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||||||| | |||||||| | | || |||| |||||
Sbjct 21885765 CATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCAGGCTGAGGGGAGGCAT 21885715
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || |||||| | || ||||| || || || ||
Sbjct 21886400 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTCT 21886341
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | |||||| ||||| || ||||| || || || || || || ||
Sbjct 21886340 GACACCATTGATAATGTCAAAGCCAAAATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 21886281
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | ||||||||||| | || ||| | ||| | | ||||||||
Sbjct 21886280 CAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTACAAT 21886221
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | || | || | ||| | || ||||| ||
Sbjct 21886220 ATCCAAAAGGAGTCCACACTCCACCTCGTCCTCCGTCTTCGTGGTGGGAT 21886171
>seq8
Length=131339754
Score = 98.7 bits (108), Expect = 9e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || ||||| || ||||||||| | || || || || || || | ||
Sbjct 122669186 CATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 122669127
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | ||||| || || |||||||| || || || || || || ||
Sbjct 122669126 GGACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGACCA 122669067
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| | || | ||| || || || | || ||| | ||| | |||| |||||
Sbjct 122669066 GCAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAA 122669007
Query 27167 CATTCAAAAGGAGTCGACC 27185
||| || ||||||||||||
Sbjct 122669006 CATCCAGAAGGAGTCGACC 122668988
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||| ||||| | || || ||||| || || ||
Sbjct 3136222 CATGCAGATCTTCGTTAAGACACTGACTGGCAAAACCATCACCCTTGAGGTCGAGAGCTC 3136163
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | |||||| |||||||| |||||||| || || || || || ||
Sbjct 3136162 TGACACAATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGTATCCCCCCAGACCA 3136103
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || || || || | || ||| | ||| | | ||||||||
Sbjct 3136102 GCAGAGGCTCATTTTTGCGGGGAAGCAGCTTGAGGACGGCCGCACCCTAGCAGATTACAA 3136043
Query 27167 CATTCAAAAGGAGTCGACC 27185
||| ||||||||||| |||
Sbjct 3136042 CATCCAAAAGGAGTCCACC 3136024
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||||||||| | || || ||||| || || ||
Sbjct 3136450 CATGCAGATTTTTGTCAAGACCTTGACCGGCAAAACCATCACGCTTGAGGTTGAGAGCTC 3136391
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | ||||| ||||| || ||||| || ||||| || || || ||
Sbjct 3136390 TGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCA 3136331
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | ||||| || || | || || || || | |||| |||||
Sbjct 3136330 GCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGTCGTACTCTCGCCGACTACAA 3136271
Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191
||| ||||||||||| ||| | |||
Sbjct 3136270 CATCCAAAAGGAGTCCACCCTCCAT 3136246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||| || || | || || ||||| || || ||
Sbjct 3136678 CATGCAGATTTTTGTCAAGACCTTGACAGGAAAAACCATCACCCTTGAGGTCGAGAGCTC 3136619
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || || | ||||| ||||| || ||||| || ||||| || || || ||
Sbjct 3136618 CGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3136559
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || || || || | || || | ||| || | || || ||
Sbjct 3136558 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCCTTGCTGACTATAA 3136499
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| ||||||||||||||| | ||| | || | ||| | | ||||||||
Sbjct 3136498 CATCCAAAAGGAGTCGACCCTCCATCTTGTCCTTCGTCTAAGAGGTGGCAT 3136448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434854293027840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |