Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq3 120 3e-22 seq8 98.7 9e-16 >seq6 Length=78779235 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||||||| | || || || || || ||| | || Sbjct 3702854 ATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAATCCTCT 3702913 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||| || || ||||| ||||| || || ||||| || Sbjct 3702914 GACACCATCGACAATGTTAAAGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 3702973 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| |||||||| | || || | |||| || | ||||||||| Sbjct 3702974 CAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGATTACAAC 3703033 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||| | || | ||| | |||||||||| Sbjct 3703034 ATCCAAAAGGAGTCTACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCAT 3703083 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || || | || || || || Sbjct 3703538 ATGCAGATTTTCGTCAAAACCCTGACCGGCAAGACCATCACGTTGGAGGTCGAGAGCTCT 3703597 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| || ||||| || || || || Sbjct 3703598 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 3703657 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| |||||| | || || | ||| | | ||||||||| Sbjct 3703658 CAGAGGCTCATCTTTGCCGGTAAACAACTCGAGGATGGCCGGACTCTCGCTGATTACAAC 3703717 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||||||| | || ||||| Sbjct 3703718 ATTCAGAAGGAGTCGACCCTCCACTTGGT 3703746 >seq3 Length=113259003 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| |||| || ||||||||||| || Sbjct 21885945 CATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTC 21885886 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| || ||||| ||||| || ||||| || || || || Sbjct 21885885 AGACACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCA 21885826 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||| || | ||| || | || ||||| Sbjct 21885825 GCAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAA 21885766 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | |||||||| | | || |||| ||||| Sbjct 21885765 CATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCAGGCTGAGGGGAGGCAT 21885715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || |||||| | || ||||| || || || || Sbjct 21886400 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTCT 21886341 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| || ||||| || || || || || || || Sbjct 21886340 GACACCATTGATAATGTCAAAGCCAAAATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 21886281 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||||||||| | || ||| | ||| | | |||||||| Sbjct 21886280 CAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTACAAT 21886221 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || | || | ||| | || ||||| || Sbjct 21886220 ATCCAAAAGGAGTCCACACTCCACCTCGTCCTCCGTCTTCGTGGTGGGAT 21886171 >seq8 Length=131339754 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || || || || || | || Sbjct 122669186 CATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 122669127 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || |||||||| || || || || || || || Sbjct 122669126 GGACACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCGGACCA 122669067 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| || || || | || ||| | ||| | |||| ||||| Sbjct 122669066 GCAGCGCCTCATTTTCGCGGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAA 122669007 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||||||| Sbjct 122669006 CATCCAGAAGGAGTCGACC 122668988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| ||||| | || || ||||| || || || Sbjct 3136222 CATGCAGATCTTCGTTAAGACACTGACTGGCAAAACCATCACCCTTGAGGTCGAGAGCTC 3136163 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| |||||||| |||||||| || || || || || || Sbjct 3136162 TGACACAATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGTATCCCCCCAGACCA 3136103 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | || ||| | ||| | | |||||||| Sbjct 3136102 GCAGAGGCTCATTTTTGCGGGGAAGCAGCTTGAGGACGGCCGCACCCTAGCAGATTACAA 3136043 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| ||||||||||| ||| Sbjct 3136042 CATCCAAAAGGAGTCCACC 3136024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||| | || || ||||| || || || Sbjct 3136450 CATGCAGATTTTTGTCAAGACCTTGACCGGCAAAACCATCACGCTTGAGGTTGAGAGCTC 3136391 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| || ||||| || ||||| || || || || Sbjct 3136390 TGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCA 3136331 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || || | || || || || | |||| ||||| Sbjct 3136330 GCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGTCGTACTCTCGCCGACTACAA 3136271 Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191 ||| ||||||||||| ||| | ||| Sbjct 3136270 CATCCAAAAGGAGTCCACCCTCCAT 3136246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || || | || || ||||| || || || Sbjct 3136678 CATGCAGATTTTTGTCAAGACCTTGACAGGAAAAACCATCACCCTTGAGGTCGAGAGCTC 3136619 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| ||||| || ||||| || ||||| || || || || Sbjct 3136618 CGACACAATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3136559 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | || || | ||| || | || || || Sbjct 3136558 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCCTTGCTGACTATAA 3136499 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||||||| | ||| | || | ||| | | |||||||| Sbjct 3136498 CATCCAAAAGGAGTCGACCCTCCATCTTGTCCTTCGTCTAAGAGGTGGCAT 3136448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434854293027840