Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq6 89.7 4e-13 >seq3 Length=113259003 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| ||||| ||||| || || || || |||| ||||||||| Sbjct 21886198 TGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGT 21886257 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || | |||||||| | ||| | | ||| |||||| |||||| Sbjct 21886258 TTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTG 21886317 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| | | | || || ||| || || | ||||| | || || || Sbjct 21886318 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCTGTG 21886377 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTA 39289 || ||||| |||||||| ||||||| || Sbjct 21886378 AGGGTTTTCACAAAGATCTGCATCTGTA 21886405 >seq6 Length=78779235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || ||||| ||||| || || | || |||||||||||||| || || Sbjct 3703045 CTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAA 3702986 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| |||||||||| || | | || |||||| ||| || || || | | | Sbjct 3702985 GATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTT-TGCTTTAACAT 3702927 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || || || || || | ||||| | || || || || ||||| | Sbjct 3702926 TGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCA 3702867 Query 39272 CAAAGATTTGCATCTTTA 39289 ||||||| ||||||| || Sbjct 3702866 CAAAGATCTGCATCTGTA 3702849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429483867854096