Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=84732013 Score = 102 bits (112), Expect = 7e-17 Identities = 534/845 (63%), Gaps = 18/845 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| || ||| | ||| |||||||| || || || || | |||||||| Sbjct 24868965 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 24868906 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||||||||| || | || || |||||| | | ||| | | | Sbjct 24868905 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 24868846 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || |||||||| || ||||| ||||| | ||||| || || | || || || | || Sbjct 24868845 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 24868786 Query 4437 CTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 || || || || || |||| ||||| |||| ||| || || || | | | Sbjct 24868785 GCAACCGGCAGAGC--ATCGCAAACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 24868728 Query 4495 TATCTTTTATTTTATCTTT----AGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | | || | | |||| || | ||| | | || || |||| || || Sbjct 24868727 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT----ACAACAAGCAA 24868672 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || ||||| ||||| | |||||||||| || || ||||| ||||| ||||| || Sbjct 24868671 GCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCC 24868612 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| || || | |||||||||||| || || || ||| ||| || ||||| || Sbjct 24868611 GGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATC 24868552 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| ||| ||||| || | |||| |||| || || || | | | ||| Sbjct 24868551 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGA-CT--CTGAGCCATCGATC 24868495 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||| | || || || ||||| || || || | || |||| ||| Sbjct 24868494 CACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAA 24868435 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | || |||||| | ||| | || || | || | || || ||||| || Sbjct 24868434 AGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCG 24868375 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || || || || || ||||| || ||||| ||| || || || | || || Sbjct 24868374 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGG 24868315 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || || || || | | | | ||| || || || ||||| ||| || || Sbjct 24868314 ACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAG 24868255 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTT--TTCCAGTGG 5027 || || | || || | | |||| | ||||| | | ||| | ||| | ||||||| Sbjct 24868254 AAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGG 24868195 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | | ||||| | | ||| || || || | ||||| ||||| || || || || ||| Sbjct 24868194 CGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 24868135 Query 5088 TACAT 5092 ||||| Sbjct 24868134 TACAT 24868130 Score = 102 bits (112), Expect = 7e-17 Identities = 534/845 (63%), Gaps = 18/845 (2%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| || ||| | ||| |||||||| || || || || | |||||||| Sbjct 26602661 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 26602720 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||||||||| || | || || |||||| | | ||| | | | Sbjct 26602721 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 26602780 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || |||||||| || ||||| ||||| | ||||| || || | || || || | || Sbjct 26602781 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 26602840 Query 4437 CTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 || || || || || |||| ||||| |||| ||| || || || | | | Sbjct 26602841 GCAACCGGCAGAGC--ATCGCAAACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 26602898 Query 4495 TATCTTTTATTTTATCTTT----AGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | | || | | |||| || | ||| | | || || |||| || || Sbjct 26602899 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT----ACAACAAGCAA 26602954 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || ||||| ||||| | |||||||||| || || ||||| ||||| ||||| || Sbjct 26602955 GCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCC 26603014 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| || || | |||||||||||| || || || ||| ||| || ||||| || Sbjct 26603015 GGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAAATC 26603074 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| ||| ||||| || | |||| |||| || || || | | | ||| Sbjct 26603075 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGA-CT--CTGAGCCATCGATC 26603131 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||| | || || || ||||| || || || | || |||| ||| Sbjct 26603132 CACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAA 26603191 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | || |||||| | ||| | || || | || | || || ||||| || Sbjct 26603192 AGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCG 26603251 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || || || || || ||||| || ||||| ||| || || || | || || Sbjct 26603252 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGG 26603311 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || || || || | | | | ||| || || || ||||| ||| || || Sbjct 26603312 ACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAG 26603371 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTT--TTCCAGTGG 5027 || || | || || | | |||| | ||||| | | ||| | ||| | ||||||| Sbjct 26603372 AAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGG 26603431 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | | ||||| | | ||| || || || | ||||| ||||| || || || || ||| Sbjct 26603432 CGGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 26603491 Query 5088 TACAT 5092 ||||| Sbjct 26603492 TACAT 26603496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426988226566736