Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 3e-23
seq3174 87.8 2e-12
seq831 87.8 2e-12
seq10 87.8 2e-12
seq8 84.2 3e-11
>seq4
Length=146560859
Score = 123 bits (136), Expect = 3e-23
Identities = 173/240 (72%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 78387 TGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA 78446
||| || || ||| || ||||||||||| || ||||| ||||| |||||||| |
Sbjct 9258809 TGAGGACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 9258750
Query 78447 GAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGC 78505
|| | ||||| |||||||| | ||| || || || || | ||| |||||||| || ||
Sbjct 9258749 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 9258691
Query 78506 TACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTA 78565
|| | ||||| ||| || ||||||||||| || ||| | | | ||| || | ||
Sbjct 9258690 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATA 9258631
Query 78566 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||| | || | |||||| |||||||| |||| || ||||||||| || ||||| ||
Sbjct 9258630 GGATCTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
>seq3174
Length=2385
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || |||||||||| || ||||| ||||| |||||||| | || | |||||
Sbjct 1329 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 1388
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516
|||||||| | ||| || || || || | ||| |||||||| || || || | |||||
Sbjct 1389 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 1447
Query 78517 ACATATGCTGAGGTCTTTCAAC 78538
||| || ||||||||||| ||
Sbjct 1448 GCATGTGTTGAGGTCTTTCTAC 1469
>seq831
Length=51122
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || |||||||||| || ||||| ||||| |||||||| | || | |||||
Sbjct 19028 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 19087
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516
|||||||| | ||| || || || || | ||| |||||||| || || || | |||||
Sbjct 19088 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 19146
Query 78517 ACATATGCTGAGGTCTTTCAAC 78538
||| || ||||||||||| ||
Sbjct 19147 GCATGTGTTGAGGTCTTTCTAC 19168
>seq10
Length=73452336
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || |||||||||| || ||||| ||||| |||||||| | || | |||||
Sbjct 1168056 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 1167997
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516
|||||||| | ||| || || || || | ||| |||||||| || || || | |||||
Sbjct 1167996 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 1167938
Query 78517 ACATATGCTGAGGTCTTTCAAC 78538
||| || ||||||||||| ||
Sbjct 1167937 GCATGTGTTGAGGTCTTTCTAC 1167916
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || |||||||||| || ||||| ||||| |||||||| | || | |||||
Sbjct 24507697 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 24507756
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516
|||||||| | ||| || || || || | ||| |||||||| || || || | |||||
Sbjct 24507757 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 24507815
Query 78517 ACATATGCTGAGGTCTTTCAAC 78538
||| || ||||||||||| ||
Sbjct 24507816 GCATGTGTTGAGGTCTTTCTAC 24507837
>seq8
Length=131339754
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|||||| ||||||| || |||||| |||||| || || ||||| |||| |||||||
Sbjct 92346120 CTCTCTCTCATATTTTGTGTATAGCTTTTCAAACTCCTCGCCCCAGTAATCAGCCAATCC 92346179
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016
| ||||||| ||||| | | ||| | | |||| | | || | | ||| ||
Sbjct 92346180 CGAAGATTCATTAGGGCAAAATAGTGAGTATTGCCCATAATTTTGGACCCTCTCCATGAA 92346239
Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
|||||||||||||| || ||| ||| ||||| | | ||| | ||||||
Sbjct 92346240 AAGATCAGGTATCCAAAGGGCATAAAAGAGATCATGAGCTCTGTTTTCTTC 92346290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694566405818880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |