Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq3174 87.8 2e-12 seq831 87.8 2e-12 seq10 87.8 2e-12 seq8 84.2 3e-11 >seq4 Length=146560859 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 78387 TGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA 78446 ||| || || ||| || ||||||||||| || ||||| ||||| |||||||| | Sbjct 9258809 TGAGGACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 9258750 Query 78447 GAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGC 78505 || | ||||| |||||||| | ||| || || || || | ||| |||||||| || || Sbjct 9258749 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 9258691 Query 78506 TACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTA 78565 || | ||||| ||| || ||||||||||| || ||| | | | ||| || | || Sbjct 9258690 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATA 9258631 Query 78566 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| | || | |||||| |||||||| |||| || ||||||||| || ||||| || Sbjct 9258630 GGATCTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 >seq3174 Length=2385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| || ||||| ||||| |||||||| | || | ||||| Sbjct 1329 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 1388 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | ||| || || || || | ||| |||||||| || || || | ||||| Sbjct 1389 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 1447 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||| || ||||||||||| || Sbjct 1448 GCATGTGTTGAGGTCTTTCTAC 1469 >seq831 Length=51122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| || ||||| ||||| |||||||| | || | ||||| Sbjct 19028 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 19087 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | ||| || || || || | ||| |||||||| || || || | ||||| Sbjct 19088 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 19146 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||| || ||||||||||| || Sbjct 19147 GCATGTGTTGAGGTCTTTCTAC 19168 >seq10 Length=73452336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| || ||||| ||||| |||||||| | || | ||||| Sbjct 1168056 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 1167997 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | ||| || || || || | ||| |||||||| || || || | ||||| Sbjct 1167996 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 1167938 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||| || ||||||||||| || Sbjct 1167937 GCATGTGTTGAGGTCTTTCTAC 1167916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| || ||||| ||||| |||||||| | || | ||||| Sbjct 24507697 AGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACATTAGATG 24507756 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | ||| || || || || | ||| |||||||| || || || | ||||| Sbjct 24507757 GTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACTCTCATCA 24507815 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||| || ||||||||||| || Sbjct 24507816 GCATGTGTTGAGGTCTTTCTAC 24507837 >seq8 Length=131339754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| ||||||| || |||||| |||||| || || ||||| |||| ||||||| Sbjct 92346120 CTCTCTCTCATATTTTGTGTATAGCTTTTCAAACTCCTCGCCCCAGTAATCAGCCAATCC 92346179 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 | ||||||| ||||| | | ||| | | |||| | | || | | ||| || Sbjct 92346180 CGAAGATTCATTAGGGCAAAATAGTGAGTATTGCCCATAATTTTGGACCCTCTCCATGAA 92346239 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||||||| || ||| ||| ||||| | | ||| | |||||| Sbjct 92346240 AAGATCAGGTATCCAAAGGGCATAAAAGAGATCATGAGCTCTGTTTTCTTC 92346290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694566405818880