Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 129 8e-25 seq10 113 6e-20 seq3174 95.1 2e-14 seq831 95.1 2e-14 seq962 84.2 3e-11 seq5 84.2 3e-11 >seq4 Length=146560859 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||||| |||| | || || |||||||| | ||| || Sbjct 9259124 CCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACCA 9259065 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || || ||||||||| ||||||||| || |||||||||||| || ||| Sbjct 9259064 TTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGAA 9259005 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| || | |||||||| ||| Sbjct 9259004 ACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATATG 9258945 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| |||| || ||| || ||||| Sbjct 9258944 CCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || || ||||| |||| |||| || Sbjct 9260037 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTCGCCCCAGCAATCAGCCAATCC 9259978 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | |||||||||||| |||| | | || | | |||||| Sbjct 9259977 CGGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAA 9259918 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||| || || ||||| || ||| ||| ||||| || | ||| ||||||| Sbjct 9259917 GAGGTCGGGAATCCAGAGGGCATAAAAGAGATCGCGTGCTCTGTGTTCTTC 9259867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || | ||||| |||| |||| | Sbjct 124302354 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTTGCCCCAGCAATCAGCCAATTC 124302413 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || |||||| || || | |||||||||||| |||| | | || | || |||||| Sbjct 124302414 TTGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTTTCCATAAA 124302473 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||| || | ||||| || ||| |||| ||||| | | ||| ||||||| Sbjct 124302474 GAGGTCGTGAATCCAGAGGGCATTAAAGAGATCATGTGCTCTTTGTTCTTC 124302524 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || | ||||| |||| ||| | Sbjct 146133599 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTTGCCCCAGCAATCAGTCAATAC 146133658 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | |||||||||||| |||| | | || | | |||||| Sbjct 146133659 TGGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAA 146133718 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||| || || |||||||| ||| ||| ||||| | | ||| ||||||| Sbjct 146133719 GAGTTCGGGAATCCATAGGGCATAAAAGAGATCATGTGCTCTGTGTTCTTC 146133769 >seq10 Length=73452336 Score = 113 bits (124), Expect = 6e-20 Identities = 141/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 76784 TTATAA-ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || || |||||||| | ||| || ||||| || || ||||||||| |||||| Sbjct 24507399 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTCCGTTTGTTCCACGAATATA 24507458 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| || |||||||||||| || ||| | || |||||||| || ||| || Sbjct 24507459 ACTGCCCATTGCACGAATATTGTGAACAGAAACACCAATTCCTCCAGCAGATTTGCTTAT 24507518 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | |||||||| |||||||| ||||||||||| |||| || Sbjct 24507519 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAAT 24507578 Query 76963 AAGAAAACAGCT 76974 ||| || ||||| Sbjct 24507579 AAGGAAGCAGCT 24507590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 76784 TTATAA-ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || || |||||||| | ||| || ||||| || | ||||||||| |||||| Sbjct 1168354 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1168295 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| || ||||| | |||| || ||| | || ||||||| || ||| || Sbjct 1168294 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1168235 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | |||||||| |||||||| ||||||||||| |||| || Sbjct 1168234 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAAT 1168175 Query 76963 AAGAAAACAGCT 76974 ||| || ||||| Sbjct 1168174 AAGGAAGCAGCT 1168163 >seq3174 Length=2385 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 76784 TTATAA-ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || || |||||||| | ||| || ||||| || | ||||||||| |||||| Sbjct 1031 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 1090 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| || ||||| | |||| || ||| | || ||||||| || ||| || Sbjct 1091 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 1150 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | |||||||| |||||||| ||||||||||| |||| || Sbjct 1151 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAAT 1210 Query 76963 AAGAAAACAGCT 76974 ||| || ||||| Sbjct 1211 AAGGAAGCAGCT 1222 >seq831 Length=51122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 76784 TTATAA-ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || || |||||||| | ||| || ||||| || | ||||||||| |||||| Sbjct 18730 TTATAACACCCTTAACATTGGGACAATACCATTAGAAGTTTCGTTTGTTCCACGAATATA 18789 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| || ||||| | |||| || ||| | || ||||||| || ||| || Sbjct 18790 ACTGCCCATTGCACAAGTATTGTGAACAGAAACACCAATTCCTCTAGCAGATTTGCTTAT 18849 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | |||||||| |||||||| ||||||||||| |||| || Sbjct 18850 AACAGCACACTCCTTGAGAGTGTCATATATGCCCTCGATACTATCATCTCTCATACAAAT 18909 Query 76963 AAGAAAACAGCT 76974 ||| || ||||| Sbjct 18910 AAGGAAGCAGCT 18921 >seq962 Length=19680 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || | ||||| |||| |||| || Sbjct 18738 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTTGCCCCAGCAATCAGCCAATCC 18797 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || |||||| || || | |||||||||||| |||| | | || | || |||||| Sbjct 18798 TTGAGCTTCATTAGGGCAAAACAATGACCACTCTCCAT-TATTTGGACTCTTTCCATAAA 18856 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||| || | ||||| || ||| |||| ||||| | | ||| ||||||| Sbjct 18857 GAGGTCGTGAATCCAGAGGGCATTAAAGAGATCATGTGCTCTTTGTTCTTC 18907 >seq5 Length=131469567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || | ||||| |||| |||| || Sbjct 41379824 CTCTCTGTCATATTTTGTGTACAACTTATTAAACTCCTTGCCCCAGCAATCAGCCAATCC 41379883 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || |||||| || || | |||||||||||| |||| | | || | || |||||| Sbjct 41379884 TTGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTTTCCATAAA 41379943 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 || || | ||||| || ||| |||| ||||| | | ||| ||||||| Sbjct 41379944 GAAGTCGTGAATCCAGAGGGCATTAAAGAGATCATGTGCTCTTTGTTCTTC 41379994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||| || ||| | ||| || | ||||| |||| |||| || Sbjct 42846779 CTCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTTGCCCCAGCAATCAGCCAATCC 42846838 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || |||||| || || | |||||||||||| |||| | | || | || |||||| Sbjct 42846839 TTGAGCTTCATTAGGGCAAAACAATGACCACTCTCCAT-TATTTGGACTCTTTCCATAAA 42846897 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||| || | ||||| || ||| |||| ||||| | | ||| ||||||| Sbjct 42846898 GAGGTCGTGAATCCAGAGGGCATTAAAGAGATCATGTGCTCTTTGTTCTTC 42846948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712829313469440