Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq3 100 6e-16 seq2 100 6e-16 seq4 98.7 2e-15 >seq1 Length=75119905 Score = 181 bits (200), Expect = 2e-40 Identities = 327/470 (70%), Gaps = 10/470 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 54133080 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 54133021 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| ||| | ||||| || ||| | || |||||| Sbjct 54133020 TGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAG 54132961 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || | || ||| Sbjct 54132960 CTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTCCTCTA--CGAA-CTC 54132904 Query 230353 CAGAAC---AAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||| ||||| | | | || ||| | ||| | | || || ||||| | Sbjct 54132903 CTCAACGGCAAGCT-CGAGGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTTGACAT 54132845 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| | ||||||||| || |||||| | |||||| ||| | ||||||||||| | ||| Sbjct 54132844 CGAGAGGGAGTTCATCTGCGACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGGACT 54132785 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||||| ||||||||||| ||||| ||||||||| | | || || || | | || | Sbjct 54132784 CATGGGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCACGGCTCTGGGGTGC-AGCA 54132726 Query 230529 AG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 || |||||||| | ||||| || | | ||||||||||| ||||| || || |||| Sbjct 54132725 AGATGTACAACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGA 54132666 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||||| ||||| ||| | ||||| |||| | || |||||| Sbjct 54132665 CCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCTTCCGTGATG 54132616 Score = 145 bits (160), Expect = 2e-29 Identities = 313/461 (68%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||||||||| || ||||||| | || || || || || | || || || ||| Sbjct 42406034 TTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCGGGCTCCTTC 42406093 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| ||||| | | || |||||| Sbjct 42406094 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACTTTCTCCAACGAG 42406153 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 | ||| |||||||| || || || | || | | || | || | ||| Sbjct 42406154 CTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGCCTGCCTCCTCTACGACATCCTC 42406213 Query 230353 CAGAACAAGCT--ACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | || |||||| || | || ||| ||| | ||| | || || ||||| | | Sbjct 42406214 CGGAGCAAGCTGGACGAGTC---ACGCGTCCGTGAGATCGTCGGCGACGCCGTTGACATC 42406270 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | |||||| | || ||||| | || || ||| || | |||||||||| || || Sbjct 42406271 GAGAGGGAGTTTGTCTGCGACGCGCTCCCTTG-CGCTCTCGTGGGCATGAACGGCGACCT 42406329 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 |||| | ||||||||||| ||||| || |||||| | | | || || || | | |||| Sbjct 42406330 TATGAGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCATGGCGCTGGGCTGCAAGAA 42406389 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | | ||||| || | | |||||||| || || || || || ||||| Sbjct 42406390 GATGTACAACGCCACAAACCCATTCGACTGGATGGAGCTGATCTCCCTGCAGGGAAAGAC 42406449 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||| |||||||| |||||||| | ||||| ||| |||||| Sbjct 42406450 CAATTTCTTCGAGAAGCGTGTTGGAGACTACCAGAAGGCCT 42406490 >seq3 Length=59935730 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 28949040 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 28948981 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 28948980 AGCCCCACGGTGGGC 28948966 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 37958589 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37958648 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 37958649 CCCCACGGTGGGC 37958661 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14052878 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14052937 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14052938 CCCACGGTGGGC 14052949 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14055149 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14055208 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14055209 CCCACGGTGGGC 14055220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 38157369 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 38157428 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 38157429 CCCACGGTGGGC 38157440 >seq2 Length=59384932 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 59302612 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 59302671 Query 165770 CCCACGATGGGCA 165782 |||||| |||||| Sbjct 59302672 CCCACGGTGGGCA 59302684 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16670911 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16670970 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16670971 CCCACGGTGGGC 16670982 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17117595 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17117654 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17117655 CCCACGGTGGGC 17117666 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 27488011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27487952 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27487951 CCCACGGTGGGC 27487940 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 48927055 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48927114 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48927115 CCCACGGTGGGC 48927126 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 49686687 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 49686746 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 49686747 CCCACGGTGGGC 49686758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 53530225 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 53530284 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 53530285 CCCACGGTGGGC 53530296 >seq4 Length=48772488 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3028872 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3028931 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3028932 CCCACGGTGGGC 3028943 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3522319 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3522378 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3522379 CCCACGGTGGGC 3522390 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8597732 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8597673 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8597672 CCCACGGTGGGC 8597661 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 33927704 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33927645 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 33927644 CCCACGGTGGGC 33927633 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 34600431 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34600490 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34600491 CCCACGGTGGGC 34600502 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 34902151 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34902210 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34902211 CCCACGGTGGGC 34902222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823620505640