Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 8e-11 >seq1 Length=75119905 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||| |||||| || ||||| |||||||| ||||| ||||| Sbjct 42405927 ATGTAGGTCTCGATAAGCAGGGAGTACATCTCAGAGTGGATGTTCTCGATGGCGATCTGG 42405868 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAG 17352 || ||||| ||| ||||| || || | || || || || | ||| || ||| || Sbjct 42405867 AAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACGTCGGACAT-GAACCGGGACGCGAG 42405809 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| |||||||||||| |||||||| || || Sbjct 42405808 GTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGC 42405770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545418859040