Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=75119905 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||||| || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||||||||| ||| | |||||||| || || ||| Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || |||||||| ||||| || || || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721392197440