Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 100 4e-16 >seq3 Length=59935730 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || ||| | ||| ||||| | | Sbjct 13692811 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTTGAATCTTCT 13692870 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || || |||||||| || || || || || || || || Sbjct 13692871 GACACGATAGATAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 13692930 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | |||||| | | || |||| ||| ||||| Sbjct 13692931 CAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGGCACACCTTAGCAGACTATAAC 13692990 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || |||| | || | ||| | |||||||| || Sbjct 13692991 ATTCAAAAAGAGTCCACCCTGCACCTTGTCCTTCGTCTGCGAGGTGGCAT 13693040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455735590400