Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq3 89.7 1e-12 >seq1 Length=75119905 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || || |||||||||||||| || || |||| |||||||| ||||||||||| Sbjct 42406464 TTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCATCCAGTCGAATGGGTTT 42406405 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | | |||||||| ||| | | | |||||| | ||| | |||||| || |||| | Sbjct 42406404 GTGGCGTTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCCGCGACGAACTCG 42406345 Query 157394 ATGTACT 157400 ||||||| Sbjct 42406344 ATGTACT 42406338 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 54132634 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 54132693 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| |||||| || |||||||| |||| | ||||||| | ||| | Sbjct 54132694 CCAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGTGAGCAGGCG 54132753 Query 157378 GTCCGCCACAAACTTGATGTACT 157400 ||| || || |||| |||||||| Sbjct 54132754 GTCGGCGACGAACTCGATGTACT 54132776 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || ||| || || ||||||| |||| ||| || ||||| |||| || ||| | | || Sbjct 55061992 CAGAGACTTTGACTACGATTATTTTGGTTTTAAGACGCTTGAGAGGTCTTATTTGTTGAA 55061933 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| | ||||| ||||| ||| |||| |||| || || Sbjct 55061932 AGTTGGTGGAAAGGTTGTGGAAAGGCCACAGCATATGTTAATGAGAGTTTCTGTTGGAAT 55061873 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 ||||||||||| || ||| | | | |||||| | ||| | |||||| | Sbjct 55061872 ACACAAGGATGATATCGAGTCTGCTGTGAAAACGTACCACATGATGTCCCAGCGCTGGTT 55061813 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 || ||||| | || || || |||||||| || ||| Sbjct 55061812 TACTCATGCTTCCCCAACCCTTTTCAACGCTGGCACC 55061776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766014786304