Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 5e-12 seq4 84.2 2e-11 >seq3 Length=59935730 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || |||||||||||||| | || | |||| Sbjct 2681941 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCT 2682000 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || | || || ||| ||| | ||| |||||||| Sbjct 2682001 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 2682060 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| |||||| | ||| |||| ||||||| | Sbjct 2682061 TGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTC 2682120 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 2682121 TTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 |||||||| || | || |||| ||| || || || || || || ||||||||||| || Sbjct 3234820 CCTCCCCGAAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCA 3234879 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | || ||||| || ||||||| | || || || ||| Sbjct 3234880 AGGGTCCTGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGGTCAGGGGGG 3234939 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | ||| || | | | |||||| | ||| Sbjct 3234940 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGATGACTCCACC 3234999 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| ||||| || || ||||| |||||||| Sbjct 3235000 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATTTGCAT 3235046 >seq4 Length=48772488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||| |||||||| ||||| ||||||||||| || Sbjct 36296463 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 36296404 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||| || ||||| ||| | || || | ||||||||| || Sbjct 36296403 AGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAATATCAGCCGCTGTTGATCCGGAGGA 36296344 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 36296343 ATCCCTTCCTTGTC 36296330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343870548860