Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-11 >seq1 Length=75119905 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 94183 GCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCA 94242 || ||||| || | |||||| || ||||||||||| | | |||||| | || ||| Sbjct 47005251 GCAATAGATGCTAGATTGCATACAGCAGTTTCCTCAGGACTTGTGTACTCAATTATCTCA 47005192 Query 94243 GTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATG 94302 |||||||| |||||||| ||||| | || | ||||| |||||| ||| |||||| Sbjct 47005191 GTGCACAAGTTTGAAGATTTGATCGTCCCCAGATTTTGCTGGTTACTCTTCCTATTGCAT 47005132 Query 94303 GTATCCT 94309 ||||||| Sbjct 47005131 GTATCCT 47005125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583644986740