Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq1 89.7 5e-13 >seq3 Length=59935730 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||| || || ||||| || ||| Sbjct 2681926 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 2681985 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| |||||||||| ||||| || || || Sbjct 2681986 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 2682045 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | || | ||||| | | ||||||| Sbjct 2682046 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCCACC 2682105 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||||| ||||| || || || || || |||||| Sbjct 2682106 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 2682153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||||||||||| |||||| | ||||| Sbjct 13693266 GCCACCACGCAGACGAAGGACAAGGTGTAGGGTAGACTCTTTCTGAATGCTGTAATCCGC 13693207 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || |||||| |||| || || ||||| || || || Sbjct 13693206 CAGGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGG 13693147 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | |||| || | | || | || || | | ||| | Sbjct 13693146 GATGCCTTCCTTGTC-TTGAATCTTTGCCTTGACATTGTCAATCGTATCCGATGACTCGA 13693088 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 13693087 CCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 13693039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| ||||| | ||| | || | ||| | || |||||||||||||||||||| || || Sbjct 13693038 GCCACCTCGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCTGC 13692979 Query 139596 TCA-TTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | | ||||| | || || ||||| || |||||| |||| || || ||||| || || Sbjct 13692978 TAAGGTGTGCCC--ATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGG 13692921 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | |||| || | | || | ||||| | | || Sbjct 13692920 GGGATGCCCTCCTTGTC-TTGAATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTC 13692862 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | |||||||| || | || || || || || ||||| Sbjct 13692861 AACCTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 13692811 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||| || || ||||| || || Sbjct 2681698 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2681757 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || || |||||||||| ||||| || || || Sbjct 2681758 AGGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2681817 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 2681818 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 2681877 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 2681878 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 2681925 >seq1 Length=75119905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||| | |||||||| || || ||||||||||| Sbjct 27893360 TGGCCACCACGGAGGCGGAGCACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCC 27893419 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || |||| || | || || ||||| ||||||||| ||||||| || ||||| || || Sbjct 27893420 GCCAGAGTGCGTCCA-TCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGG 27893478 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| || || | | || | ||||| | | || Sbjct 27893479 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTC 27893538 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | ||||| |||||||| || || || || || ||||| Sbjct 27893539 AACCTCCAGTGTAATGGTCTTCCCGGTCAAAGTCTTGACAAAGATCTGCAT 27893589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || |||||||| ||||||||||| || Sbjct 55138330 GCCACCACGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGC 55138389 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | || ||||||| || || || |||| ||||| ||||| || ||||| Sbjct 55138390 CAAGGTGCGCCCATCGGCGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGAGG 55138449 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || |||||| || | | || | ||||| | | ||| || Sbjct 55138450 AATGCCCTCCTTATCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCAGATGACTCAAC 55138509 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| || | || || || ||||| ||||| Sbjct 55138510 CTCAAGAGTAATTGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 55138557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063826377600