Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq3 93.3 6e-14 >seq1 Length=75119905 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||||||||| ||| | |||||||| || || ||| Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| || || || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 54132920 CAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGC 54132979 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || |||||||| || ||||| || |||| |||| || || || || ||||| Sbjct 54132980 CCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 54133038 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||||| || || | ||| Sbjct 54133039 GATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTC 54133074 Score = 86.0 bits (94), Expect = 9e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||||||||| || ||||| | || || |||||||| || || || Sbjct 42406194 CAGGCAAAGTCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGG 42406135 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 42406134 CCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 42406076 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || || || || ||| ||||| || || | ||| Sbjct 42406075 TATCCCCTCGACGCAGGCGAAGGCGACCAGGCGCTC 42406040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||| || ||||| || || ||||| | |||| |||| | Sbjct 47003978 GTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTGAACCAACGCTGGGACATCAGATGG 47003919 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || || || || || || || | ||| || || ||||| | || | |||||| Sbjct 47003918 TATGTTCTGATGGCAGAGTCAATGTCATCCTTG-TGTATCCCTACTGATACTCTCATTAA 47003860 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| ||||||||||||| | | | ||||| | |||||| | |||| Sbjct 47003859 CATGTGCTGTGGTCTTTCAACGACAATCCCACCAAGCTTCAAGAGGTAAGACCTCTCCAG 47003800 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || ||||| || |||| || |||||| | |||||||| || Sbjct 47003799 AGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCCTATCGTAAATTAT 47003752 >seq3 Length=59935730 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | ||| || ||||| || |||||||| | |||| | | | Sbjct 55061777 GTGCCAGCGTTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGGGACATCATGTGG 55061836 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||| | | ||| || || ||||| | ||| || ||||| || | || | |||||| Sbjct 55061837 TACGTTTTCACAGCAGACTCGATATCATCCTTG-TGTATTCCAACAGAAACTCTCATTAA 55061895 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||| ||||| || ||||| || | ||| | | ||||||||| ||||| | || | Sbjct 55061896 CATATGCTGTGGCCTTTCCACAACCTTTCCACCAACTTTCAACAAATAAGACCTCTCAAG 55061955 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || |||||||||||||| | ||| |||||||| || ||||| || Sbjct 55061956 CGTCTTAAAACCAAAATAATCGTAGTCAAAGTCTCTGTCATAAATTAT 55062003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268548605920