Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq3 98.7 1e-15 >seq1 Length=75119905 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || ||||||||| ||| | |||||||| ||| || ||| Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || |||||||| ||||| || || || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 >seq3 Length=59935730 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || || || | ||| || ||||| || |||||||| | |||| | | | Sbjct 55061777 GTGCCAGCGTTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGGGACATCATGTGG 55061836 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||||| | | ||| || || ||||| | ||| |||||||| || | || | |||||| Sbjct 55061837 TACGTTTTCACAGCAGACTCGATATCATCCTTG-TGTATTCCAACAGAAACTCTCATTAA 55061895 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||||||||| || ||||| || | ||| | | ||||||||| || || | || | Sbjct 55061896 CATATGCTGTGGCCTTTCCACAACCTTTCCACCAACTTTCAACAAATAAGACCTCTCAAG 55061955 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||||||||| | ||| |||||||| || ||||| || Sbjct 55061956 CGTCTTAAAACCAAAATAATCGTAGTCAAAGTCTCTGTCATAAATTAT 55062003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 ||| || | ||||||||| |||||||| || || || || || ||||| ||| |||| || Sbjct 55060108 AATGAAAGTGTCTGCTAAGCCTTGAACTCCTATTCCAATTGGCCTGTGCCTCATATTTGA 55060167 Query 71571 AATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 71624 | ||| ||| ||| || ||||||||||||||||| ||||| |||||||| Sbjct 55060168 CCTCCTTGCTGTCTC-AATGGGGTAATAATTAATATCTATTATTTTGTTGAGATT 55060221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138965101280