Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=59935730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| ||||| || ||| ||||||| || |||| | ||| || || || || ||| Sbjct 13693235 GTAGACTCTTTCTGAATGCTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTGCTTCCCA 13693176 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||| || || || |||||||| ||||| ||| ||| || Sbjct 13693175 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTG 13693116 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| | || || || | ||| | ||||||||||| | ||| Sbjct 13693115 ACATTGTCAATCGTATCCGATGACTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTC 13693056 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 13693055 TTGACGAAGATCTGCAT 13693039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014222544960