Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 >seq1 Length=75119905 Score = 161 bits (178), Expect = 1e-34 Identities = 397/587 (68%), Gaps = 15/587 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| |||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 54133499 CCATGTTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 54133440 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||||| ||| ||||| || || ||| |||| | | | ||||| || || | Sbjct 54133439 TCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCGCGCCACTGGGACGAGACGCTCT 54133380 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 54133379 CCCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 54133321 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | || ||| | || || || | | |||| | Sbjct 54133320 ATCGTGCTCGAGAACCTCGCCTCCCGGTTCATGTCC-GACGTGCAGGTGGCCGAGGCC-C 54133263 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || |||||| | |||||||| |||||||| | Sbjct 54133262 GCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCCCTGC 54133203 Query 125290 TGATTGACATGTACATTCGCGAT-CCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || | || | ||||| ||||| |||| | || || ||||| ||| ||||| Sbjct 54133202 TGCTCGAGACCTACATCCGCGACGCCGCCGAG-AAGGACCGCCTCTTCCGCGCCGTCGAC 54133144 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| ||| || || |||||||| | || | || Sbjct 54133143 ACCGTCCCCGCCGTCCGCCGCAAGGCCGTCTGGTCCATGCGCTGGATCGAAGGCGGCGAG 54133084 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| ||| |||||||||||||| ||||| Sbjct 54133083 CGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGG 54133028 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 54133027 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCT 54132969 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 54132968 CCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGCC 54132922 Score = 154 bits (170), Expect = 2e-32 Identities = 396/591 (67%), Gaps = 23/591 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | | || ||||| | ||||| ||||| ||| |||| Sbjct 42405615 CCATGTTCCCCATCCGGTTCCCTCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 42405674 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||||| || ||||| || || ||| ||| | | | ||||| || || Sbjct 42405675 TCTGGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCTGT 42405734 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | | ||||| | || | || ||| | | |||||||| |||| |||||| || | Sbjct 42405735 CCAACGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCA 42405794 Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTGT 125229 ||||| ||| || || | | || ||| | || || ||| || | |||| Sbjct 42405795 TCGTCCTCGAGAACCTCGCGTCCCGGTTCATGTCCGACGT---CCAGGTCGCCGAGGCC- 42405850 Query 125230 CGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 || || || ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 42405851 CGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTACTCCCTG 42405910 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| || || |||| || || || || ||| | Sbjct 42405911 CTTATCGAGACCTACATCCGGGAGG----ACGTCGAGAAGGACCGTCTTTTCCGCGCCGT 42405966 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| |||||| || || |||||||| | || Sbjct 42405967 CGACACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCATGCGCTGGATCGACGGCGG 42406026 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | || ||| | |||| | ||||| || |||||| ||| ||||| || ||||| | Sbjct 42406027 CGAGCGCTTTG----CCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCT 42406082 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || |||| ||||||| ||||||||||||||||| |||||||| || || || Sbjct 42406083 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACT 42406141 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| |||| || || ||||| ||||| ||||| ||||||||| Sbjct 42406142 TTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGCC 42406192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058940629280