Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq1 86.0 5e-12 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || || ||||||||||||| || ||||||| ||||| Sbjct 13693470 GTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTG 13693411 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || | |||||| || ||| | |||||| ||||| ||| || Sbjct 13693410 CTTCCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATCTT 13693351 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | | ||| || || || ||| || | || ||||| ||||| || Sbjct 13693350 CGCCTTGACGTTGTCGATTGTGTCCGAAGACTCAACCTCCAAAGTGATGGTCTTACCAGT 13693291 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || |||||||| || ||||| Sbjct 13693290 AAGCGTCTTGACAAAGATCTGCAT 13693267 >seq1 Length=75119905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || || |||||||||| || | ||||| Sbjct 27893380 CACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCCGCCAGAGTGCGTCCATCCTC 27893439 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| || ||| | |||||| ||||| Sbjct 27893440 AAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 27893499 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || || || | |||||||| || Sbjct 27893500 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCAACCTCCAGTGTAATGGTCTT 27893559 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||| || ||||| Sbjct 27893560 CCCGGTCAAAGTCTTGACAAAGATCTGCAT 27893589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572658527032