Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 seq1 114 3e-20 >seq3 Length=59935730 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || || || | ||||| || ||||| ||||| || ||| Sbjct 53307153 ATTCCACCTCGGAGGCGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 53307212 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || ||||| ||||| || |||||||| || ||||| Sbjct 53307213 GCCAATGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCAGGT 53307272 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || ||||||||||||||||| || ||||| || | ||| || || | || Sbjct 53307273 GGGATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTGTC-AGAGCTCTC 53307331 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || |||||||| || ||||| || ||||| Sbjct 53307332 GACCTCCAGAGTTATGGTCTTCCCTGTAAGTGTCTTAACAAAGATTTGCAT 53307382 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || || |||| || || | || || Sbjct 53307398 AAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAATGTCCGGCCATC 53307457 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| || || || ||||| || || || || || || ||||| || ||||| || || Sbjct 53307458 CTCTAGCTGCTTGCCGGCAAATATGAGTCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTC 53307517 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| || || || || ||||| || | ||||||| || | || ||||| || ||||||| Sbjct 53307518 CTGGATTTTGGCCTTCACATTGTCAATGGTATCGG-AGCTCTCAACCTCAAGAGTAATAG 53307576 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || || || ||||| |||||||| Sbjct 53307577 TCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 53307610 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || |||| ||||| ||||||||||| | || || | || || | ||||| Sbjct 13693251 AAGGACAAGGTGTAGGGTAGACTCTTTCTGAATGCTGTAATCCGCCAGGGTGCGCCCGTC 13693192 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || ||||| || || ||||| || || Sbjct 13693191 CTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 13693132 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| || ||||| || | ||||| | || ||||| | ||||| || Sbjct 13693131 TTGAATCTTTGCCTTGACATTGTCAATCGTATCCGATGACTCGACCTCCAAAGTAATGGT 13693072 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || ||||| || || || |||||||| Sbjct 13693071 CTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 13693039 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || || || | || || ||||| ||||| |||||||| Sbjct 13693040 ATGCCACCTCGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCT 13692981 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || || |||||||| || || | ||| || || || Sbjct 13692980 GCTAAGGTGTGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGG 13692921 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || ||||||||||| || ||||| |||| || || || ||| Sbjct 13692920 GGGATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTCA 13692861 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| |||||||| || || ||||| |||||||| Sbjct 13692860 ACCTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 13692811 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || || || | || || | || || Sbjct 53306943 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGCTAAGGTACGCCCATCC 53307002 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| ||||| || |||||||| ||||| ||||| ||||| || || ||| Sbjct 53307003 TCCAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 53307062 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 |||||||| || || || || || | ||| || || | || ||||| || || || || Sbjct 53307063 TGAATCTTGGCCTTCACGTTATCAATGGTGTC-AGAGCTCTCCACCTCAAGCGTGATGGT 53307121 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| | ||| || ||||| || |||||| Sbjct 53307122 CTTTCCAGTCAATGTCTTGACAAAGATTTGCATT 53307155 Score = 109 bits (120), Expect = 1e-18 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||||||||| ||||| | | || | ||| || || || | || || Sbjct 13692779 GTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCAAGCTACTTCCCG 13692720 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || ||||| ||||| ||||| || Sbjct 13692719 GCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGAATTTTTGCCTTC 13692660 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | || ||||| || ||||| ||||| ||||| || || Sbjct 13692659 ACATTATCGATCGTGTCAGATGACTCGACCTCAAGGGTAATTGTCTTGCCAGTGAG-GTC 13692601 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 13692600 TTCACAAAAATCTGCAT 13692584 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | || || | ||||| || || || || ||| Sbjct 13693463 GTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTGCTTCCCA 13693404 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| || || || || || || |||||||| || || Sbjct 13693403 GCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATCTTCGCCTTG 13693344 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| | || || |||||||||||||| || Sbjct 13693343 ACGTTGTCGATTGTGTCCGAAGACTCAACCTCCAAAGTGATGGTCTTACCAGTAAGCGTC 13693284 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 13693283 TTGACAAAGATCTGCAT 13693267 >seq1 Length=75119905 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || || || ||||| || || ||||| | || || | Sbjct 28209612 AGCCTCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 28209553 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || ||||||||||| || || | ||| || || ||||| || || || Sbjct 28209552 CCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCC 28209493 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| |||||||| || || || || | || ||| | || ||||| || || Sbjct 28209492 TTGTCCTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCAAGGGTG 28209433 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||| |||||||| Sbjct 28209432 ATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 26504423 TTCCACCCCTCAGCCTCAGCACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAG 26504364 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || ||||| | ||| |||||||||||||||||||| || ||||| || | Sbjct 26504363 CTAACGTTCGCCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCCGGGG 26504304 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 26504303 GAATGCCCTCTTTGTCCTGAA 26504283 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||||||||| || || || || | || || | || || Sbjct 27893833 AAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATC 27893892 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| |||||||| ||||| | ||| || || || || ||||| || || || Sbjct 27893893 CTCAAGCTGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTC 27893952 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | || || | || ||||| || ||||| || Sbjct 27893953 CTGGATCTTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGTAATGGT 27894012 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| || ||||| Sbjct 27894013 CTTGCCTGTCAAGGTCTTGACAAAGATTTGCAT 27894045 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || ||||||||||| |||||||| | | || | || || Sbjct 55138345 AAGGACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGCCAAGGTGCGCCCATC 55138404 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 | || || || || || || || || | ||| || || ||||| || || || ||||| Sbjct 55138405 GGCGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTATC 55138464 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || || || || | || || | || ||||| || ||||| || Sbjct 55138465 TTGGATTTTCGCCTTCACGTTATCGATAGTGTCAGATGACTCAACCTCAAGAGTAATTGT 55138524 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || |||||||||||||| Sbjct 55138525 CTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 55138557 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || |||||||| ||||| || || ||| ||||| ||| | ||||| | ||| Sbjct 42406064 GTCGAGGGGATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 42406123 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || |||||||||| ||||| | || | | |||||||| | |||||| Sbjct 42406124 CTCATGCCGGGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGC 42406183 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 42406184 GACTTTGCCTG 42406194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397986935824