Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=75119905 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| || || | || || | || |||| ||| | ||||||| Sbjct 9703478 ACGCCAGTGGACCCGAAGCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCA 9703537 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || || || | | |||| ||||| |||||| || |||||||| | ||| Sbjct 9703538 GCGACCTCTGGCGTCACGATAACCTCGATGATCATCTGCGCGATGCGGTCGCCAGGCTTC 9703597 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 || |||| || | |||| |||||| ||||| |||||||| ||| ||||| | Sbjct 9703598 ACAACGAAGTCCACCT--CCGAGTGGTTGAAGAGCACGACGCCCACCGGGCCACGGTAAT 9703655 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 | ||||| ||||| || ||||||||||||||| | ||||| | ||| || || || Sbjct 9703656 CCGCGTCGATCACTCCAGCGCCCACGTCGATGGAATGCTTCAACGCTAGCCCTGA 9703710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054253243936